Classifications
-------------
Input   : 497096
Passed  : 232511 (46.77%)
Removed : 264585 (53.23%)

Unique genes       : 18407
Unique transcripts : 106190

Classifications, by isoform
-------------
Full splice match       : 75699 (32.56%)
Incomplete splice match : 97262 (41.83%)
Novel in catalog        : 34930 (15.02%)
Novel not in catalog    : 22632 (9.73%)
Antisense               : 397 (0.17%)
Genic intron            : 0 (0.00%)
Genic genomic           : 258 (0.11%)
Intergenic              : 672 (0.29%)
Other                   : 661 (0.28%)

Classifications, by read
-------------
Full splice match       : 6053338 (80.42%)
Incomplete splice match : 1079894 (14.35%)
Novel in catalog        : 246963 (3.28%)
Novel not in catalog    : 138648 (1.84%)
Antisense               : 1414 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2333 (0.03%)
Intergenic              : 2058 (0.03%)
Other                   : 2529 (0.03%)

Junctions
-----------
Known canonical     : 1589088 (97.52%)
Known non-canonical : 167 (0.01%)
Novel canonical     : 40165 (2.46%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 17446 (94.78%)
Novel : 961 (5.22%)

Filter reasons
----------------
Intrapriming               : 123398 (46.64%)
Monoexonic                 : 0 (0.00%)
RT switching               : 4026 (1.52%)
Low coverage/non-canonical : 137161 (51.84%)