Classifications
-------------
Input   : 1812294
Passed  : 616008 (33.99%)
Removed : 1196286 (66.01%)

Unique genes       : 26666
Unique transcripts : 301030

Classifications, by isoform
-------------
Full splice match       : 152702 (24.79%)
Incomplete splice match : 230401 (37.40%)
Novel in catalog        : 114488 (18.59%)
Novel not in catalog    : 109354 (17.75%)
Antisense               : 1398 (0.23%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1437 (0.23%)
Intergenic              : 3469 (0.56%)
Other                   : 2759 (0.45%)

Classifications, by read
-------------
Full splice match       : 23664717 (79.40%)
Incomplete splice match : 4114172 (13.80%)
Novel in catalog        : 1173696 (3.94%)
Novel not in catalog    : 808440 (2.71%)
Antisense               : 5704 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 9775 (0.03%)
Intergenic              : 12461 (0.04%)
Other                   : 13626 (0.05%)

Junctions
-----------
Known canonical     : 4360121 (96.01%)
Known non-canonical : 345 (0.01%)
Novel canonical     : 180675 (3.98%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 22388 (83.96%)
Novel : 4278 (16.04%)

Filter reasons
----------------
Intrapriming               : 643899 (53.82%)
Monoexonic                 : 0 (0.00%)
RT switching               : 19644 (1.64%)
Low coverage/non-canonical : 532743 (44.53%)