Classifications
-------------
Input   : 1413294
Passed  : 459310 (32.50%)
Removed : 953984 (67.50%)

Unique genes       : 31360
Unique transcripts : 235558

Classifications, by isoform
-------------
Full splice match       : 113033 (24.61%)
Incomplete splice match : 169491 (36.90%)
Novel in catalog        : 77977 (16.98%)
Novel not in catalog    : 83509 (18.18%)
Antisense               : 1988 (0.43%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1674 (0.36%)
Intergenic              : 7636 (1.66%)
Other                   : 4002 (0.87%)

Classifications, by read
-------------
Full splice match       : 16567431 (67.67%)
Incomplete splice match : 5594703 (22.85%)
Novel in catalog        : 1218671 (4.98%)
Novel not in catalog    : 985101 (4.02%)
Antisense               : 15393 (0.06%)
Genic intron            : 0 (0.00%)
Genic genomic           : 13417 (0.05%)
Intergenic              : 59895 (0.24%)
Other                   : 29626 (0.12%)

Junctions
-----------
Known canonical     : 3213059 (95.26%)
Known non-canonical : 238 (0.01%)
Novel canonical     : 159506 (4.73%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 22458 (71.61%)
Novel : 8902 (28.39%)

Filter reasons
----------------
Intrapriming               : 451380 (47.32%)
Monoexonic                 : 0 (0.00%)
RT switching               : 17167 (1.80%)
Low coverage/non-canonical : 485437 (50.89%)