Classifications
-------------
Input   : 2889488
Passed  : 855037 (29.59%)
Removed : 2034451 (70.41%)

Unique genes       : 43328
Unique transcripts : 414809

Classifications, by isoform
-------------
Full splice match       : 176157 (20.60%)
Incomplete splice match : 335603 (39.25%)
Novel in catalog        : 164564 (19.25%)
Novel not in catalog    : 147520 (17.25%)
Antisense               : 3575 (0.42%)
Genic intron            : 0 (0.00%)
Genic genomic           : 3029 (0.35%)
Intergenic              : 17406 (2.04%)
Other                   : 7183 (0.84%)

Classifications, by read
-------------
Full splice match       : 16435888 (61.73%)
Incomplete splice match : 7793947 (29.27%)
Novel in catalog        : 1363151 (5.12%)
Novel not in catalog    : 924724 (3.47%)
Antisense               : 12641 (0.05%)
Genic intron            : 0 (0.00%)
Genic genomic           : 10529 (0.04%)
Intergenic              : 60562 (0.23%)
Other                   : 25953 (0.10%)

Junctions
-----------
Known canonical     : 5787244 (95.12%)
Known non-canonical : 330 (0.01%)
Novel canonical     : 296746 (4.88%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 24190 (55.83%)
Novel : 19138 (44.17%)

Filter reasons
----------------
Intrapriming               : 979966 (48.17%)
Monoexonic                 : 0 (0.00%)
RT switching               : 27248 (1.34%)
Low coverage/non-canonical : 1027237 (50.49%)