Classifications
-------------
Input   : 2124997
Passed  : 737307 (34.70%)
Removed : 1387690 (65.30%)

Unique genes       : 33789
Unique transcripts : 347954

Classifications, by isoform
-------------
Full splice match       : 171495 (23.26%)
Incomplete splice match : 285053 (38.66%)
Novel in catalog        : 132790 (18.01%)
Novel not in catalog    : 127685 (17.32%)
Antisense               : 3123 (0.42%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2025 (0.27%)
Intergenic              : 7895 (1.07%)
Other                   : 7241 (0.98%)

Classifications, by read
-------------
Full splice match       : 16909003 (64.67%)
Incomplete splice match : 6977397 (26.69%)
Novel in catalog        : 1297976 (4.96%)
Novel not in catalog    : 888671 (3.40%)
Antisense               : 11029 (0.04%)
Genic intron            : 0 (0.00%)
Genic genomic           : 8386 (0.03%)
Intergenic              : 25526 (0.10%)
Other                   : 27798 (0.11%)

Junctions
-----------
Known canonical     : 5068028 (95.27%)
Known non-canonical : 313 (0.01%)
Novel canonical     : 251452 (4.73%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 24324 (71.99%)
Novel : 9465 (28.01%)

Filter reasons
----------------
Intrapriming               : 593230 (42.75%)
Monoexonic                 : 0 (0.00%)
RT switching               : 18270 (1.32%)
Low coverage/non-canonical : 776190 (55.93%)