Classifications
-------------
Input   : 1966470
Passed  : 626319 (31.85%)
Removed : 1340151 (68.15%)

Unique genes       : 33284
Unique transcripts : 314893

Classifications, by isoform
-------------
Full splice match       : 147000 (23.47%)
Incomplete splice match : 229869 (36.70%)
Novel in catalog        : 128167 (20.46%)
Novel not in catalog    : 103070 (16.46%)
Antisense               : 2185 (0.35%)
Genic intron            : 0 (0.00%)
Genic genomic           : 2077 (0.33%)
Intergenic              : 9462 (1.51%)
Other                   : 4489 (0.72%)

Classifications, by read
-------------
Full splice match       : 16395020 (73.12%)
Incomplete splice match : 3977563 (17.74%)
Novel in catalog        : 1255970 (5.60%)
Novel not in catalog    : 736490 (3.28%)
Antisense               : 8167 (0.04%)
Genic intron            : 0 (0.00%)
Genic genomic           : 7495 (0.03%)
Intergenic              : 25423 (0.11%)
Other                   : 16700 (0.07%)

Junctions
-----------
Known canonical     : 4642806 (95.76%)
Known non-canonical : 319 (0.01%)
Novel canonical     : 205473 (4.24%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 22598 (67.89%)
Novel : 10686 (32.11%)

Filter reasons
----------------
Intrapriming               : 738546 (55.11%)
Monoexonic                 : 0 (0.00%)
RT switching               : 19128 (1.43%)
Low coverage/non-canonical : 582477 (43.46%)