Classifications
-------------
Input   : 1939606
Passed  : 594101 (30.63%)
Removed : 1345505 (69.37%)

Unique genes       : 33255
Unique transcripts : 297018

Classifications, by isoform
-------------
Full splice match       : 141243 (23.77%)
Incomplete splice match : 220781 (37.16%)
Novel in catalog        : 118647 (19.97%)
Novel not in catalog    : 95542 (16.08%)
Antisense               : 2052 (0.35%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1982 (0.33%)
Intergenic              : 9681 (1.63%)
Other                   : 4173 (0.70%)

Classifications, by read
-------------
Full splice match       : 15071904 (73.98%)
Incomplete splice match : 3488851 (17.13%)
Novel in catalog        : 1092200 (5.36%)
Novel not in catalog    : 664540 (3.26%)
Antisense               : 7152 (0.04%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6546 (0.03%)
Intergenic              : 26031 (0.13%)
Other                   : 15034 (0.07%)

Junctions
-----------
Known canonical     : 4284210 (95.66%)
Known non-canonical : 306 (0.01%)
Novel canonical     : 193843 (4.33%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 22382 (67.30%)
Novel : 10873 (32.70%)

Filter reasons
----------------
Intrapriming               : 741380 (55.10%)
Monoexonic                 : 0 (0.00%)
RT switching               : 17662 (1.31%)
Low coverage/non-canonical : 586463 (43.59%)