Classifications
-------------
Input   : 1824661
Passed  : 596654 (32.70%)
Removed : 1228007 (67.30%)

Unique genes       : 32240
Unique transcripts : 303268

Classifications, by isoform
-------------
Full splice match       : 140936 (23.62%)
Incomplete splice match : 216063 (36.21%)
Novel in catalog        : 123560 (20.71%)
Novel not in catalog    : 98896 (16.58%)
Antisense               : 1971 (0.33%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1980 (0.33%)
Intergenic              : 8741 (1.47%)
Other                   : 4507 (0.76%)

Classifications, by read
-------------
Full splice match       : 14231736 (73.11%)
Incomplete splice match : 3330896 (17.11%)
Novel in catalog        : 1158078 (5.95%)
Novel not in catalog    : 693544 (3.56%)
Antisense               : 6233 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6664 (0.03%)
Intergenic              : 23709 (0.12%)
Other                   : 16576 (0.09%)

Junctions
-----------
Known canonical     : 4469377 (95.76%)
Known non-canonical : 309 (0.01%)
Novel canonical     : 197661 (4.23%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 22323 (69.24%)
Novel : 9917 (30.76%)

Filter reasons
----------------
Intrapriming               : 668941 (54.47%)
Monoexonic                 : 0 (0.00%)
RT switching               : 16210 (1.32%)
Low coverage/non-canonical : 542856 (44.21%)