Classifications
-------------
Input   : 1800840
Passed  : 602458 (33.45%)
Removed : 1198382 (66.55%)

Unique genes       : 30722
Unique transcripts : 307903

Classifications, by isoform
-------------
Full splice match       : 142510 (23.65%)
Incomplete splice match : 215101 (35.70%)
Novel in catalog        : 125097 (20.76%)
Novel not in catalog    : 103914 (17.25%)
Antisense               : 1928 (0.32%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1915 (0.32%)
Intergenic              : 7916 (1.31%)
Other                   : 4077 (0.68%)

Classifications, by read
-------------
Full splice match       : 16836159 (75.08%)
Incomplete splice match : 3469269 (15.47%)
Novel in catalog        : 1291855 (5.76%)
Novel not in catalog    : 774187 (3.45%)
Antisense               : 7294 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 6514 (0.03%)
Intergenic              : 22320 (0.10%)
Other                   : 16247 (0.07%)

Junctions
-----------
Known canonical     : 4575035 (95.75%)
Known non-canonical : 292 (0.01%)
Novel canonical     : 202979 (4.25%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 21715 (70.68%)
Novel : 9007 (29.32%)

Filter reasons
----------------
Intrapriming               : 655723 (54.72%)
Monoexonic                 : 0 (0.00%)
RT switching               : 18546 (1.55%)
Low coverage/non-canonical : 524113 (43.74%)