Classifications
-------------
Input   : 415196
Passed  : 206394 (49.71%)
Removed : 208802 (50.29%)

Unique genes       : 17507
Unique transcripts : 95287

Classifications, by isoform
-------------
Full splice match       : 69371 (33.61%)
Incomplete splice match : 85302 (41.33%)
Novel in catalog        : 31124 (15.08%)
Novel not in catalog    : 19079 (9.24%)
Antisense               : 264 (0.13%)
Genic intron            : 0 (0.00%)
Genic genomic           : 220 (0.11%)
Intergenic              : 510 (0.25%)
Other                   : 524 (0.25%)

Classifications, by read
-------------
Full splice match       : 4866983 (81.11%)
Incomplete splice match : 805249 (13.42%)
Novel in catalog        : 207166 (3.45%)
Novel not in catalog    : 114982 (1.92%)
Antisense               : 898 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1662 (0.03%)
Intergenic              : 1530 (0.03%)
Other                   : 1906 (0.03%)

Junctions
-----------
Known canonical     : 1467215 (97.76%)
Known non-canonical : 179 (0.01%)
Novel canonical     : 33505 (2.23%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 16801 (95.97%)
Novel : 706 (4.03%)

Filter reasons
----------------
Intrapriming               : 96164 (46.06%)
Monoexonic                 : 0 (0.00%)
RT switching               : 3742 (1.79%)
Low coverage/non-canonical : 108896 (52.15%)