Classifications
-------------
Input   : 369954
Passed  : 194379 (52.54%)
Removed : 175575 (47.46%)

Unique genes       : 16619
Unique transcripts : 89807

Classifications, by isoform
-------------
Full splice match       : 65805 (33.85%)
Incomplete splice match : 79317 (40.81%)
Novel in catalog        : 30762 (15.83%)
Novel not in catalog    : 17226 (8.86%)
Antisense               : 185 (0.10%)
Genic intron            : 0 (0.00%)
Genic genomic           : 161 (0.08%)
Intergenic              : 407 (0.21%)
Other                   : 516 (0.27%)

Classifications, by read
-------------
Full splice match       : 3809696 (79.86%)
Incomplete splice match : 661312 (13.86%)
Novel in catalog        : 193790 (4.06%)
Novel not in catalog    : 101483 (2.13%)
Antisense               : 541 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 963 (0.02%)
Intergenic              : 1092 (0.02%)
Other                   : 1597 (0.03%)

Junctions
-----------
Known canonical     : 1534095 (98.05%)
Known non-canonical : 174 (0.01%)
Novel canonical     : 30405 (1.94%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 16077 (96.74%)
Novel : 542 (3.26%)

Filter reasons
----------------
Intrapriming               : 79835 (45.47%)
Monoexonic                 : 0 (0.00%)
RT switching               : 3581 (2.04%)
Low coverage/non-canonical : 92159 (52.49%)