Classifications
-------------
Input   : 18026
Passed  : 12135 (67.32%)
Removed : 5891 (32.68%)

Unique genes       : 4601
Unique transcripts : 8422

Classifications, by isoform
-------------
Full splice match       : 6147 (50.66%)
Incomplete splice match : 3600 (29.67%)
Novel in catalog        : 1215 (10.01%)
Novel not in catalog    : 1084 (8.93%)
Antisense               : 4 (0.03%)
Genic intron            : 0 (0.00%)
Genic genomic           : 16 (0.13%)
Intergenic              : 7 (0.06%)
Other                   : 62 (0.51%)

Classifications, by read
-------------
Full splice match       : 134455 (35.01%)
Incomplete splice match : 88902 (23.15%)
Novel in catalog        : 14300 (3.72%)
Novel not in catalog    : 145998 (38.01%)
Antisense               : 9 (0.00%)
Genic intron            : 0 (0.00%)
Genic genomic           : 47 (0.01%)
Intergenic              : 15 (0.00%)
Other                   : 335 (0.09%)

Junctions
-----------
Known canonical     : 74399 (97.55%)
Known non-canonical : 12 (0.02%)
Novel canonical     : 1856 (2.43%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 4590 (99.76%)
Novel : 11 (0.24%)

Filter reasons
----------------
Intrapriming               : 2499 (42.42%)
Monoexonic                 : 0 (0.00%)
RT switching               : 237 (4.02%)
Low coverage/non-canonical : 3155 (53.56%)