Classifications
-------------
Input   : 338073
Passed  : 175843 (52.01%)
Removed : 162230 (47.99%)

Unique genes       : 17320
Unique transcripts : 86445

Classifications, by isoform
-------------
Full splice match       : 60805 (34.58%)
Incomplete splice match : 69674 (39.62%)
Novel in catalog        : 24636 (14.01%)
Novel not in catalog    : 19132 (10.88%)
Antisense               : 307 (0.17%)
Genic intron            : 0 (0.00%)
Genic genomic           : 286 (0.16%)
Intergenic              : 286 (0.16%)
Other                   : 717 (0.41%)

Classifications, by read
-------------
Full splice match       : 4617679 (80.83%)
Incomplete splice match : 769213 (13.46%)
Novel in catalog        : 191086 (3.34%)
Novel not in catalog    : 129417 (2.27%)
Antisense               : 1057 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 1145 (0.02%)
Intergenic              : 862 (0.02%)
Other                   : 2508 (0.04%)

Junctions
-----------
Known canonical     : 1117902 (97.04%)
Known non-canonical : 121 (0.01%)
Novel canonical     : 33984 (2.95%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 16816 (97.09%)
Novel : 504 (2.91%)

Filter reasons
----------------
Intrapriming               : 62030 (38.24%)
Monoexonic                 : 0 (0.00%)
RT switching               : 3020 (1.86%)
Low coverage/non-canonical : 97180 (59.90%)