Classifications
-------------
Input   : 265439
Passed  : 147281 (55.49%)
Removed : 118158 (44.51%)

Unique genes       : 16215
Unique transcripts : 73571

Classifications, by isoform
-------------
Full splice match       : 54428 (36.96%)
Incomplete splice match : 56583 (38.42%)
Novel in catalog        : 20651 (14.02%)
Novel not in catalog    : 14536 (9.87%)
Antisense               : 215 (0.15%)
Genic intron            : 0 (0.00%)
Genic genomic           : 171 (0.12%)
Intergenic              : 174 (0.12%)
Other                   : 523 (0.36%)

Classifications, by read
-------------
Full splice match       : 3440652 (81.71%)
Incomplete splice match : 523733 (12.44%)
Novel in catalog        : 148869 (3.54%)
Novel not in catalog    : 93668 (2.22%)
Antisense               : 677 (0.02%)
Genic intron            : 0 (0.00%)
Genic genomic           : 710 (0.02%)
Intergenic              : 567 (0.01%)
Other                   : 2045 (0.05%)

Junctions
-----------
Known canonical     : 969422 (97.41%)
Known non-canonical : 111 (0.01%)
Novel canonical     : 25635 (2.58%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 15883 (97.95%)
Novel : 332 (2.05%)

Filter reasons
----------------
Intrapriming               : 44361 (37.54%)
Monoexonic                 : 0 (0.00%)
RT switching               : 2464 (2.09%)
Low coverage/non-canonical : 71333 (60.37%)