Classifications
-------------
Input   : 59040
Passed  : 32217 (54.57%)
Removed : 26823 (45.43%)

Unique genes       : 8334
Unique transcripts : 20921

Classifications, by isoform
-------------
Full splice match       : 13397 (41.58%)
Incomplete splice match : 10763 (33.41%)
Novel in catalog        : 3535 (10.97%)
Novel not in catalog    : 4242 (13.17%)
Antisense               : 58 (0.18%)
Genic intron            : 0 (0.00%)
Genic genomic           : 39 (0.12%)
Intergenic              : 26 (0.08%)
Other                   : 157 (0.49%)

Classifications, by read
-------------
Full splice match       : 1722833 (52.21%)
Incomplete splice match : 1061761 (32.18%)
Novel in catalog        : 76497 (2.32%)
Novel not in catalog    : 436877 (13.24%)
Antisense               : 233 (0.01%)
Genic intron            : 0 (0.00%)
Genic genomic           : 122 (0.00%)
Intergenic              : 61 (0.00%)
Other                   : 1529 (0.05%)

Junctions
-----------
Known canonical     : 173293 (96.05%)
Known non-canonical : 15 (0.01%)
Novel canonical     : 7111 (3.94%)
Novel non-canonical : 0 (0.00%)

Genes
-------
Known : 8265 (99.17%)
Novel : 69 (0.83%)

Filter reasons
----------------
Intrapriming               : 9705 (36.18%)
Monoexonic                 : 0 (0.00%)
RT switching               : 880 (3.28%)
Low coverage/non-canonical : 16238 (60.54%)