# This file was produced by bcftools stats (1.20+htslib-1.20) and can be plotted using plot-vcfstats. # The command line was: bcftools stats --samples HG002 --fasta-ref human_GRCh38_no_alt_analysis_set.fasta - # # Definition of sets: # ID [2]id [3]tab-separated file names ID 0 # SN, Summary numbers: # number of records .. number of data rows in the VCF # number of no-ALTs .. reference-only sites, ALT is either "." or identical to REF # number of SNPs .. number of rows with a SNP # number of MNPs .. number of rows with a MNP, such as CC>TT # number of indels .. number of rows with an indel # number of others .. number of rows with other type, for example a symbolic allele or # a complex substitution, such as ACT>TCGA # number of multiallelic sites .. number of rows with multiple alternate alleles # number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs # # Note that rows containing multiple types will be counted multiple times, in each # counter. For example, a row with a SNP and an indel increments both the SNP and # the indel counter. # # SN [2]id [3]key [4]value SN 0 number of samples: 1 SN 0 number of records: 4983806 SN 0 number of no-ALTs: 0 SN 0 number of SNPs: 4077513 SN 0 number of MNPs: 0 SN 0 number of indels: 906292 SN 0 number of others: 1 SN 0 number of multiallelic sites: 0 SN 0 number of multiallelic SNP sites: 0 # TSTV, transitions/transversions: # TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT) TSTV 0 2666524 1410989 1.89 2666524 1410989 1.89 # ICS, Indel context summary: # ICS [2]id [3]repeat-consistent [4]repeat-inconsistent [5]not applicable [6]c/(c+i) ratio ICS 0 222114 22037 662141 0.9097 # ICL, Indel context by length: # ICL [2]id [3]length of repeat element [4]repeat-consistent deletions) [5]repeat-inconsistent deletions [6]consistent insertions [7]inconsistent insertions [8]c/(c+i) ratio ICL 0 2 68023 3404 65702 5798 0.9356 ICL 0 3 14287 1887 8634 2409 0.8422 ICL 0 4 26082 1953 21823 2671 0.9120 ICL 0 5 6555 774 4911 949 0.8694 ICL 0 6 1943 421 1155 513 0.7684 ICL 0 7 719 219 208 254 0.6621 ICL 0 8 818 189 221 201 0.7271 ICL 0 9 477 78 107 81 0.7860 ICL 0 10 367 122 82 114 0.6555 # SiS, Singleton stats: # SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable SiS 0 1 2282201 1532867 749334 598767 163626 14021 421120 # AF, Stats by non-reference allele frequency: # AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable AF 0 0.000000 2282201 1532867 749334 598767 163626 14021 421120 AF 0 0.990000 1795312 1133657 661655 307525 58488 8016 241021 # QUAL, Stats by quality # QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels QUAL 0 19.5 101 45 56 48 QUAL 0 19.6 522 273 249 190 QUAL 0 19.7 687 346 341 265 QUAL 0 19.8 878 488 390 281 QUAL 0 19.9 1027 536 491 292 QUAL 0 20.0 1138 570 568 302 QUAL 0 20.1 1238 656 582 326 QUAL 0 20.2 1319 668 651 348 QUAL 0 20.3 1304 664 640 323 QUAL 0 20.4 1399 704 695 368 QUAL 0 20.5 1532 791 741 375 QUAL 0 20.6 1561 775 786 357 QUAL 0 20.7 1668 862 806 363 QUAL 0 20.8 1648 844 804 391 QUAL 0 20.9 1793 839 954 369 QUAL 0 21.0 1743 873 870 381 QUAL 0 21.1 1737 887 850 380 QUAL 0 21.2 1909 1023 886 405 QUAL 0 21.3 1836 886 950 407 QUAL 0 21.4 1955 943 1012 392 QUAL 0 21.5 2017 1019 998 433 QUAL 0 21.6 2025 980 1045 447 QUAL 0 21.7 2021 1042 979 473 QUAL 0 21.8 1944 967 977 467 QUAL 0 21.9 1999 1057 942 426 QUAL 0 22.0 2066 1015 1051 485 QUAL 0 22.1 2077 1031 1046 612 QUAL 0 22.2 2109 1089 1020 690 QUAL 0 22.3 2163 1078 1085 759 QUAL 0 22.4 2214 1110 1104 856 QUAL 0 22.5 2115 1013 1102 879 QUAL 0 22.6 2196 1068 1128 917 QUAL 0 22.7 2199 1121 1078 983 QUAL 0 22.8 2316 1155 1161 1052 QUAL 0 22.9 2292 1161 1131 1009 QUAL 0 23.0 2311 1187 1124 1183 QUAL 0 23.1 2271 1137 1134 1087 QUAL 0 23.2 2366 1173 1193 1134 QUAL 0 23.3 2391 1204 1187 1122 QUAL 0 23.4 2332 1196 1136 1178 QUAL 0 23.5 2428 1219 1209 1132 QUAL 0 23.6 2458 1263 1195 1273 QUAL 0 23.7 2438 1236 1202 1235 QUAL 0 23.8 2467 1292 1175 1233 QUAL 0 23.9 2490 1303 1187 1236 QUAL 0 24.0 2535 1244 1291 1263 QUAL 0 24.1 2610 1339 1271 1263 QUAL 0 24.2 2628 1298 1330 1336 QUAL 0 24.3 2711 1397 1314 1302 QUAL 0 24.4 2664 1334 1330 1327 QUAL 0 24.5 2731 1383 1348 1321 QUAL 0 24.6 2787 1408 1379 1319 QUAL 0 24.7 2734 1406 1328 1395 QUAL 0 24.8 2829 1449 1380 1312 QUAL 0 24.9 2725 1403 1322 1337 QUAL 0 25.0 2862 1459 1403 1421 QUAL 0 25.1 2919 1510 1409 1369 QUAL 0 25.2 3002 1479 1523 1425 QUAL 0 25.3 2852 1418 1434 1399 QUAL 0 25.4 2932 1519 1413 1408 QUAL 0 25.5 3057 1554 1503 1459 QUAL 0 25.6 3031 1517 1514 1447 QUAL 0 25.7 3223 1646 1577 1416 QUAL 0 25.8 3096 1614 1482 1503 QUAL 0 25.9 3180 1654 1526 1547 QUAL 0 26.0 3159 1625 1534 1556 QUAL 0 26.1 3155 1661 1494 1535 QUAL 0 26.2 3171 1592 1579 1559 QUAL 0 26.3 3246 1639 1607 1545 QUAL 0 26.4 3202 1616 1586 1537 QUAL 0 26.5 3340 1731 1609 1588 QUAL 0 26.6 3269 1668 1601 1568 QUAL 0 26.7 3360 1736 1624 1617 QUAL 0 26.8 3372 1698 1674 1577 QUAL 0 26.9 3374 1729 1645 1646 QUAL 0 27.0 3397 1745 1652 1610 QUAL 0 27.1 3425 1805 1620 1648 QUAL 0 27.2 3517 1812 1705 1592 QUAL 0 27.3 3486 1809 1677 1611 QUAL 0 27.4 3488 1783 1705 1668 QUAL 0 27.5 3448 1797 1651 1735 QUAL 0 27.6 3437 1786 1651 1665 QUAL 0 27.7 3599 1905 1694 1691 QUAL 0 27.8 3427 1838 1589 1764 QUAL 0 27.9 3441 1809 1632 1751 QUAL 0 28.0 3503 1794 1709 1724 QUAL 0 28.1 3643 1889 1754 1715 QUAL 0 28.2 3589 1909 1680 1797 QUAL 0 28.3 3493 1840 1653 1707 QUAL 0 28.4 3569 1917 1652 1735 QUAL 0 28.5 3649 1965 1684 1817 QUAL 0 28.6 3565 1906 1659 1873 QUAL 0 28.7 3590 1796 1794 1788 QUAL 0 28.8 3640 1884 1756 1865 QUAL 0 28.9 3594 1900 1694 1940 QUAL 0 29.0 3659 1939 1720 1854 QUAL 0 29.1 3682 2031 1651 1922 QUAL 0 29.2 3757 1987 1770 1873 QUAL 0 29.3 3628 1925 1703 1942 QUAL 0 29.4 3721 2058 1663 1895 QUAL 0 29.5 3604 1914 1690 1891 QUAL 0 29.6 3634 1948 1686 1871 QUAL 0 29.7 3690 1985 1705 1862 QUAL 0 29.8 3631 1940 1691 1848 QUAL 0 29.9 3690 1976 1714 1955 QUAL 0 30.0 3818 2091 1727 1974 QUAL 0 30.1 3699 2016 1683 2002 QUAL 0 30.2 3855 2082 1773 1946 QUAL 0 30.3 3733 2019 1714 2011 QUAL 0 30.4 3892 2159 1733 2048 QUAL 0 30.5 3887 2158 1729 2009 QUAL 0 30.6 3855 2184 1671 1959 QUAL 0 30.7 3809 2134 1675 2080 QUAL 0 30.8 3952 2152 1800 2050 QUAL 0 30.9 3960 2179 1781 1993 QUAL 0 31.0 3962 2193 1769 1910 QUAL 0 31.1 4181 2313 1868 2073 QUAL 0 31.2 4204 2345 1859 2108 QUAL 0 31.3 4146 2286 1860 2162 QUAL 0 31.4 4191 2338 1853 2133 QUAL 0 31.5 4229 2380 1849 2090 QUAL 0 31.6 4191 2354 1837 2081 QUAL 0 31.7 4295 2404 1891 2142 QUAL 0 31.8 4420 2547 1873 2052 QUAL 0 31.9 4450 2560 1890 2175 QUAL 0 32.0 4538 2590 1948 2251 QUAL 0 32.1 4725 2739 1986 2321 QUAL 0 32.2 4691 2684 2007 2215 QUAL 0 32.3 4908 2836 2072 2214 QUAL 0 32.4 4742 2690 2052 2280 QUAL 0 32.5 5018 2912 2106 2248 QUAL 0 32.6 4937 2859 2078 2319 QUAL 0 32.7 4969 2888 2081 2200 QUAL 0 32.8 5188 3096 2092 2369 QUAL 0 32.9 5210 3063 2147 2366 QUAL 0 33.0 5276 3053 2223 2276 QUAL 0 33.1 5479 3241 2238 2449 QUAL 0 33.2 5435 3259 2176 2342 QUAL 0 33.3 5674 3324 2350 2366 QUAL 0 33.4 5709 3481 2228 2437 QUAL 0 33.5 5852 3520 2332 2481 QUAL 0 33.6 5794 3557 2237 2509 QUAL 0 33.7 6030 3586 2444 2468 QUAL 0 33.8 6076 3681 2395 2534 QUAL 0 33.9 6205 3728 2477 2497 QUAL 0 34.0 6047 3632 2415 2598 QUAL 0 34.1 6213 3752 2461 2553 QUAL 0 34.2 6054 3701 2353 2651 QUAL 0 34.3 6345 3869 2476 2598 QUAL 0 34.4 6413 3935 2478 2698 QUAL 0 34.5 6527 3970 2557 2761 QUAL 0 34.6 6515 4020 2495 2686 QUAL 0 34.7 6470 3969 2501 2816 QUAL 0 34.8 6548 4005 2543 2702 QUAL 0 34.9 6648 4038 2610 2700 QUAL 0 35.0 6554 4093 2461 2646 QUAL 0 35.1 6526 4048 2478 2869 QUAL 0 35.2 6538 4047 2491 2792 QUAL 0 35.3 6736 4204 2532 2863 QUAL 0 35.4 6728 4251 2477 2898 QUAL 0 35.5 6626 4096 2530 2861 QUAL 0 35.6 6619 4131 2488 2783 QUAL 0 35.7 6710 4131 2579 2860 QUAL 0 35.8 6713 4182 2531 2862 QUAL 0 35.9 6754 4247 2507 2788 QUAL 0 36.0 6774 4230 2544 2921 QUAL 0 36.1 6788 4186 2602 2954 QUAL 0 36.2 6709 4183 2526 2962 QUAL 0 36.3 6687 4195 2492 2813 QUAL 0 36.4 6600 4106 2494 2962 QUAL 0 36.5 6576 4171 2405 2849 QUAL 0 36.6 6372 4012 2360 2929 QUAL 0 36.7 6439 4079 2360 2868 QUAL 0 36.8 6640 4147 2493 2896 QUAL 0 36.9 6561 4208 2353 2863 QUAL 0 37.0 6524 4070 2454 2848 QUAL 0 37.1 6341 3977 2364 2881 QUAL 0 37.2 6515 4122 2393 2811 QUAL 0 37.3 6556 4140 2416 2891 QUAL 0 37.4 6416 4061 2355 2820 QUAL 0 37.5 6344 4019 2325 2885 QUAL 0 37.6 6392 4111 2281 2878 QUAL 0 37.7 6328 3977 2351 2824 QUAL 0 37.8 6379 4021 2358 2820 QUAL 0 37.9 6416 4037 2379 2785 QUAL 0 38.0 6382 4063 2319 2854 QUAL 0 38.1 6264 3978 2286 2851 QUAL 0 38.2 6215 3918 2297 2690 QUAL 0 38.3 6310 4004 2306 2788 QUAL 0 38.4 6168 3878 2290 2662 QUAL 0 38.5 6280 3992 2288 2651 QUAL 0 38.6 6358 4049 2309 2645 QUAL 0 38.7 6350 4048 2302 2586 QUAL 0 38.8 6313 4011 2302 2711 QUAL 0 38.9 6446 4080 2366 2618 QUAL 0 39.0 6461 4118 2343 2562 QUAL 0 39.1 6293 4006 2287 2644 QUAL 0 39.2 6522 4192 2330 2543 QUAL 0 39.3 6647 4265 2382 2499 QUAL 0 39.4 6511 4171 2340 2526 QUAL 0 39.5 6572 4236 2336 2475 QUAL 0 39.6 6692 4335 2357 2478 QUAL 0 39.7 6602 4226 2376 2501 QUAL 0 39.8 6535 4242 2293 2406 QUAL 0 39.9 6699 4335 2364 2405 QUAL 0 40.0 6687 4306 2381 2401 QUAL 0 40.1 6500 4303 2197 2359 QUAL 0 40.2 6720 4448 2272 2401 QUAL 0 40.3 6896 4530 2366 2309 QUAL 0 40.4 6906 4497 2409 2344 QUAL 0 40.5 7072 4625 2447 2347 QUAL 0 40.6 7039 4681 2358 2265 QUAL 0 40.7 7293 4762 2531 2253 QUAL 0 40.8 7342 4853 2489 2237 QUAL 0 40.9 7453 4892 2561 2264 QUAL 0 41.0 7486 4914 2572 2253 QUAL 0 41.1 7673 5073 2600 2141 QUAL 0 41.2 7809 5121 2688 2209 QUAL 0 41.3 8023 5268 2755 2245 QUAL 0 41.4 8027 5331 2696 2146 QUAL 0 41.5 8184 5445 2739 2173 QUAL 0 41.6 8686 5728 2958 2135 QUAL 0 41.7 8989 5837 3152 2036 QUAL 0 41.8 9066 6087 2979 2205 QUAL 0 41.9 9378 6246 3132 2121 QUAL 0 42.0 9594 6376 3218 2091 QUAL 0 42.1 9922 6598 3324 2118 QUAL 0 42.2 9919 6585 3334 2165 QUAL 0 42.3 10348 6906 3442 2093 QUAL 0 42.4 10540 7018 3522 2223 QUAL 0 42.5 10725 7234 3491 2255 QUAL 0 42.6 11244 7606 3638 2169 QUAL 0 42.7 11369 7678 3691 2187 QUAL 0 42.8 11898 8045 3853 2160 QUAL 0 42.9 12182 8120 4062 2127 QUAL 0 43.0 12458 8426 4032 2202 QUAL 0 43.1 12906 8640 4266 2173 QUAL 0 43.2 13244 8916 4328 2204 QUAL 0 43.3 13767 9288 4479 2172 QUAL 0 43.4 14082 9484 4598 2167 QUAL 0 43.5 14536 9824 4712 2180 QUAL 0 43.6 14901 10088 4813 2158 QUAL 0 43.7 15074 10120 4954 2167 QUAL 0 43.8 15540 10458 5082 2184 QUAL 0 43.9 16278 11043 5235 2169 QUAL 0 44.0 16665 11246 5419 2162 QUAL 0 44.1 17104 11440 5664 2172 QUAL 0 44.2 17621 11933 5688 2085 QUAL 0 44.3 17777 12005 5772 2117 QUAL 0 44.4 18304 12483 5821 2017 QUAL 0 44.5 18940 12953 5987 2068 QUAL 0 44.6 19239 13054 6185 2152 QUAL 0 44.7 19679 13429 6250 2044 QUAL 0 44.8 20224 13809 6415 2081 QUAL 0 44.9 20829 14118 6711 2128 QUAL 0 45.0 21090 14313 6777 2075 QUAL 0 45.1 21712 14755 6957 2056 QUAL 0 45.2 21960 14996 6964 1999 QUAL 0 45.3 22458 15254 7204 1990 QUAL 0 45.4 22824 15530 7294 1991 QUAL 0 45.5 23406 15788 7618 1956 QUAL 0 45.6 23688 16245 7443 1946 QUAL 0 45.7 24224 16308 7916 2050 QUAL 0 45.8 24599 16764 7835 1998 QUAL 0 45.9 25033 17013 8020 1918 QUAL 0 46.0 25281 17124 8157 1892 QUAL 0 46.1 26124 17884 8240 1846 QUAL 0 46.2 26399 17858 8541 1907 QUAL 0 46.3 27035 18425 8610 1860 QUAL 0 46.4 26978 18389 8589 1844 QUAL 0 46.5 27594 18711 8883 1855 QUAL 0 46.6 28042 18996 9046 1853 QUAL 0 46.7 28210 19183 9027 1763 QUAL 0 46.8 28421 19373 9048 1912 QUAL 0 46.9 28998 19623 9375 1768 QUAL 0 47.0 28822 19646 9176 1752 QUAL 0 47.1 29244 19972 9272 1796 QUAL 0 47.2 29430 20016 9414 1777 QUAL 0 47.3 29509 20144 9365 1746 QUAL 0 47.4 29419 20042 9377 1677 QUAL 0 47.5 29807 20383 9424 1717 QUAL 0 47.6 29506 20193 9313 1741 QUAL 0 47.7 29550 20330 9220 1763 QUAL 0 47.8 29611 20279 9332 1679 QUAL 0 47.9 29341 20030 9311 1662 QUAL 0 48.0 28859 19647 9212 1601 QUAL 0 48.1 28698 19601 9097 1640 QUAL 0 48.2 28569 19523 9046 1588 QUAL 0 48.3 28293 19329 8964 1608 QUAL 0 48.4 27527 18904 8623 1623 QUAL 0 48.5 26700 18298 8402 1673 QUAL 0 48.6 26528 18239 8289 1587 QUAL 0 48.7 25204 17378 7826 1576 QUAL 0 48.8 24309 16627 7682 1619 QUAL 0 48.9 23512 16064 7448 1499 QUAL 0 49.0 22163 15242 6921 1551 QUAL 0 49.1 20729 14107 6622 1530 QUAL 0 49.2 19116 13006 6110 1503 QUAL 0 49.3 17606 11916 5690 1580 QUAL 0 49.4 16170 10949 5221 1456 QUAL 0 49.5 14419 9811 4608 1477 QUAL 0 49.6 12946 8769 4177 1492 QUAL 0 49.7 11383 7635 3748 1505 QUAL 0 49.8 10049 6653 3396 1543 QUAL 0 49.9 8736 5730 3006 1502 QUAL 0 50.0 7525 4920 2605 1501 QUAL 0 50.1 6653 4407 2246 1442 QUAL 0 50.2 5885 3847 2038 1527 QUAL 0 50.3 5262 3484 1778 1579 QUAL 0 50.4 4805 3132 1673 1572 QUAL 0 50.5 4237 2736 1501 1605 QUAL 0 50.6 3868 2553 1315 1508 QUAL 0 50.7 3570 2315 1255 1536 QUAL 0 50.8 3424 2180 1244 1539 QUAL 0 50.9 3146 2038 1108 1551 QUAL 0 51.0 3113 2037 1076 1534 QUAL 0 51.1 3079 1994 1085 1495 QUAL 0 51.2 2960 1873 1087 1543 QUAL 0 51.3 2883 1850 1033 1500 QUAL 0 51.4 2815 1829 986 1492 QUAL 0 51.5 2864 1824 1040 1566 QUAL 0 51.6 2846 1887 959 1509 QUAL 0 51.7 2802 1854 948 1464 QUAL 0 51.8 2884 1844 1040 1511 QUAL 0 51.9 2876 1886 990 1448 QUAL 0 52.0 2989 1930 1059 1470 QUAL 0 52.1 3060 2005 1055 1512 QUAL 0 52.2 3019 1936 1083 1489 QUAL 0 52.3 3115 2080 1035 1479 QUAL 0 52.4 3095 2019 1076 1499 QUAL 0 52.5 3252 2110 1142 1476 QUAL 0 52.6 3231 2089 1142 1484 QUAL 0 52.7 3263 2195 1068 1544 QUAL 0 52.8 3502 2378 1124 1443 QUAL 0 52.9 3489 2323 1166 1526 QUAL 0 53.0 3484 2259 1225 1529 QUAL 0 53.1 3695 2413 1282 1498 QUAL 0 53.2 3702 2434 1268 1485 QUAL 0 53.3 3773 2436 1337 1431 QUAL 0 53.4 3676 2444 1232 1441 QUAL 0 53.5 3749 2494 1255 1519 QUAL 0 53.6 4140 2711 1429 1483 QUAL 0 53.7 4359 2947 1412 1509 QUAL 0 53.8 4054 2654 1400 1447 QUAL 0 53.9 4460 2989 1471 1482 QUAL 0 54.0 4286 2830 1456 1383 QUAL 0 54.1 4660 3043 1617 1410 QUAL 0 54.2 4532 3075 1457 1448 QUAL 0 54.3 4770 3232 1538 1386 QUAL 0 54.4 4829 3209 1620 1372 QUAL 0 54.5 4890 3262 1628 1346 QUAL 0 54.6 5008 3379 1629 1342 QUAL 0 54.7 5272 3580 1692 1307 QUAL 0 54.8 5189 3457 1732 1384 QUAL 0 54.9 5945 3981 1964 1275 QUAL 0 55.0 5467 3644 1823 1298 QUAL 0 55.1 5558 3702 1856 1284 QUAL 0 55.2 6063 4079 1984 1317 QUAL 0 55.3 5912 3919 1993 1259 QUAL 0 55.4 6296 4229 2067 1235 QUAL 0 55.5 6196 4144 2052 1194 QUAL 0 55.6 6596 4489 2107 1170 QUAL 0 55.7 6718 4594 2124 1154 QUAL 0 55.8 7014 4634 2380 1192 QUAL 0 55.9 6794 4506 2288 1173 QUAL 0 56.0 7089 4768 2321 1275 QUAL 0 56.1 6845 4730 2115 1157 QUAL 0 56.2 7399 4916 2483 1172 QUAL 0 56.3 7160 4801 2359 1131 QUAL 0 56.4 7857 5352 2505 1153 QUAL 0 56.5 7191 4828 2363 1127 QUAL 0 56.6 7607 5168 2439 1169 QUAL 0 56.7 7779 5255 2524 1086 QUAL 0 56.8 7756 5297 2459 1067 QUAL 0 56.9 7782 5248 2534 1113 QUAL 0 57.0 7610 5168 2442 1008 QUAL 0 57.1 8211 5518 2693 1085 QUAL 0 57.2 8139 5485 2654 1076 QUAL 0 57.3 7678 5176 2502 1019 QUAL 0 57.4 8084 5577 2507 1065 QUAL 0 57.5 7943 5313 2630 1005 QUAL 0 57.6 7865 5396 2469 980 QUAL 0 57.7 8384 5774 2610 989 QUAL 0 57.8 8349 5648 2701 974 QUAL 0 57.9 7885 5367 2518 984 QUAL 0 58.0 8459 5760 2699 948 QUAL 0 58.1 8397 5657 2740 959 QUAL 0 58.2 8127 5507 2620 918 QUAL 0 58.3 8643 5926 2717 955 QUAL 0 58.4 8933 6043 2890 902 QUAL 0 58.5 8643 5871 2772 880 QUAL 0 58.6 8386 5704 2682 853 QUAL 0 58.7 9092 6245 2847 862 QUAL 0 58.8 9228 6266 2962 912 QUAL 0 58.9 8674 5875 2799 872 QUAL 0 59.0 9051 6169 2882 841 QUAL 0 59.1 9663 6591 3072 845 QUAL 0 59.2 9698 6524 3174 826 QUAL 0 59.3 9215 6272 2943 839 QUAL 0 59.4 9117 6221 2896 829 QUAL 0 59.5 10141 6909 3232 818 QUAL 0 59.6 10207 6910 3297 800 QUAL 0 59.7 10205 6897 3308 828 QUAL 0 59.8 9725 6729 2996 792 QUAL 0 59.9 9526 6520 3006 789 QUAL 0 60.0 11309 7727 3582 785 QUAL 0 60.1 10863 7383 3480 813 QUAL 0 60.2 10664 7173 3491 729 QUAL 0 60.3 10247 6978 3269 715 QUAL 0 60.4 10107 6935 3172 726 QUAL 0 60.5 11078 7616 3462 741 QUAL 0 60.6 11582 7883 3699 677 QUAL 0 60.7 11527 7807 3720 663 QUAL 0 60.8 11563 7782 3781 699 QUAL 0 60.9 10809 7333 3476 707 QUAL 0 61.0 10983 7538 3445 714 QUAL 0 61.1 11073 7608 3465 716 QUAL 0 61.2 11953 8203 3750 677 QUAL 0 61.3 11672 7940 3732 733 QUAL 0 61.4 11194 7680 3514 671 QUAL 0 61.5 11539 7801 3738 636 QUAL 0 61.6 10851 7421 3430 610 QUAL 0 61.7 10693 7363 3330 652 QUAL 0 61.8 10716 7338 3378 619 QUAL 0 61.9 11698 8055 3643 607 QUAL 0 62.0 11338 7801 3537 638 QUAL 0 62.1 11145 7616 3529 636 QUAL 0 62.2 11223 7554 3669 560 QUAL 0 62.3 10964 7442 3522 608 QUAL 0 62.4 10472 7216 3256 581 QUAL 0 62.5 10158 6905 3253 623 QUAL 0 62.6 9966 6786 3180 579 QUAL 0 62.7 10871 7465 3406 580 QUAL 0 62.8 11642 7910 3732 575 QUAL 0 62.9 11445 7815 3630 548 QUAL 0 63.0 11086 7632 3454 563 QUAL 0 63.1 10898 7430 3468 543 QUAL 0 63.2 11218 7574 3644 512 QUAL 0 63.3 10413 7044 3369 562 QUAL 0 63.4 10166 6964 3202 565 QUAL 0 63.5 9976 6900 3076 497 QUAL 0 63.6 9605 6547 3058 510 QUAL 0 63.7 9723 6729 2994 508 QUAL 0 63.8 10559 7298 3261 528 QUAL 0 63.9 11436 7865 3571 449 QUAL 0 64.0 11048 7568 3480 435 QUAL 0 64.1 11103 7587 3516 489 QUAL 0 64.2 10607 7255 3352 457 QUAL 0 64.3 10184 6851 3333 428 QUAL 0 64.4 9987 6840 3147 493 QUAL 0 64.5 10522 7045 3477 487 QUAL 0 64.6 9527 6539 2988 449 QUAL 0 64.7 9572 6555 3017 434 QUAL 0 64.8 9306 6408 2898 440 QUAL 0 64.9 8954 6079 2875 469 QUAL 0 65.0 8825 6016 2809 449 QUAL 0 65.1 8819 6028 2791 470 QUAL 0 65.2 8543 5847 2696 407 QUAL 0 65.3 8317 5745 2572 396 QUAL 0 65.4 8013 5522 2491 346 QUAL 0 65.5 7690 5269 2421 398 QUAL 0 65.6 7771 5253 2518 393 QUAL 0 65.7 7438 5029 2409 389 QUAL 0 65.8 7271 4953 2318 381 QUAL 0 65.9 7119 4908 2211 355 QUAL 0 66.0 6861 4671 2190 382 QUAL 0 66.1 6765 4593 2172 380 QUAL 0 66.2 7348 4889 2459 412 QUAL 0 66.3 6545 4463 2082 360 QUAL 0 66.4 6416 4336 2080 381 QUAL 0 66.5 6252 4292 1960 359 QUAL 0 66.6 6040 4093 1947 373 QUAL 0 66.7 5883 3993 1890 398 QUAL 0 66.8 5806 4015 1791 373 QUAL 0 66.9 5639 3916 1723 372 QUAL 0 67.0 5583 3814 1769 380 QUAL 0 67.1 5317 3636 1681 349 QUAL 0 67.2 5399 3708 1691 367 QUAL 0 67.3 5254 3550 1704 344 QUAL 0 67.4 5068 3441 1627 366 QUAL 0 67.5 2720 1842 878 325 QUAL 0 67.6 1933 1311 622 330 QUAL 0 67.7 1937 1310 627 355 QUAL 0 67.8 1822 1227 595 307 QUAL 0 67.9 1741 1176 565 294 QUAL 0 68.0 1746 1164 582 305 QUAL 0 68.1 1738 1170 568 301 QUAL 0 68.2 1734 1142 592 325 QUAL 0 68.3 1609 1132 477 302 QUAL 0 68.4 1548 1030 518 310 QUAL 0 68.5 1535 1044 491 314 QUAL 0 68.6 1489 1014 475 277 QUAL 0 68.7 1461 1009 452 323 QUAL 0 68.8 1471 970 501 355 QUAL 0 68.9 1373 955 418 276 QUAL 0 69.0 1372 933 439 293 QUAL 0 69.1 1348 923 425 328 QUAL 0 69.2 2251 1304 947 346 QUAL 0 69.3 1535 996 539 331 QUAL 0 69.4 1428 945 483 279 QUAL 0 69.5 1250 853 397 322 QUAL 0 69.6 1273 862 411 317 QUAL 0 69.7 1262 871 391 321 QUAL 0 69.8 1157 771 386 337 QUAL 0 69.9 1131 779 352 280 QUAL 0 70.0 1073 725 348 326 QUAL 0 70.1 1107 738 369 298 QUAL 0 70.2 1007 672 335 296 QUAL 0 70.3 1016 674 342 289 QUAL 0 70.4 991 675 316 297 QUAL 0 70.5 936 611 325 264 QUAL 0 70.6 996 692 304 290 QUAL 0 70.7 980 660 320 345 QUAL 0 70.8 959 629 330 298 QUAL 0 70.9 944 652 292 286 QUAL 0 71.0 862 597 265 256 QUAL 0 71.1 824 533 291 262 QUAL 0 71.2 832 550 282 301 QUAL 0 71.3 838 576 262 262 QUAL 0 71.4 770 539 231 328 QUAL 0 71.5 769 521 248 289 QUAL 0 71.6 768 512 256 277 QUAL 0 71.7 818 559 259 291 QUAL 0 71.8 697 478 219 302 QUAL 0 71.9 673 447 226 239 QUAL 0 72.0 726 473 253 238 QUAL 0 72.1 705 487 218 235 QUAL 0 72.2 594 389 205 248 QUAL 0 72.3 61 28 33 248 QUAL 0 72.4 54 28 26 263 QUAL 0 72.5 51 30 21 261 QUAL 0 72.6 58 33 25 247 QUAL 0 72.7 50 30 20 262 QUAL 0 72.8 56 32 24 230 QUAL 0 72.9 46 23 23 243 QUAL 0 73.0 63 34 29 253 QUAL 0 73.1 43 23 20 267 QUAL 0 73.2 35 16 19 244 QUAL 0 73.3 36 19 17 246 QUAL 0 73.4 55 30 25 255 QUAL 0 73.5 49 29 20 255 QUAL 0 73.6 50 34 16 245 QUAL 0 73.7 39 19 20 237 QUAL 0 73.8 48 26 22 248 QUAL 0 73.9 22 10 12 218 QUAL 0 74.0 41 19 22 260 QUAL 0 74.1 39 23 16 232 QUAL 0 74.2 41 25 16 244 QUAL 0 74.3 43 19 24 242 QUAL 0 74.4 41 22 19 240 QUAL 0 74.5 39 19 20 216 QUAL 0 74.6 34 15 19 241 QUAL 0 74.7 27 15 12 212 QUAL 0 74.8 45 20 25 229 QUAL 0 74.9 36 17 19 198 QUAL 0 75.0 34 17 17 224 QUAL 0 75.1 35 20 15 168 QUAL 0 75.2 32 17 15 213 QUAL 0 75.3 33 22 11 202 QUAL 0 75.4 34 19 15 232 QUAL 0 75.5 29 18 11 197 QUAL 0 75.6 33 17 16 228 QUAL 0 75.7 26 12 14 193 QUAL 0 75.8 29 16 13 209 QUAL 0 75.9 19 9 10 216 QUAL 0 76.0 26 14 12 226 QUAL 0 76.1 19 11 8 215 QUAL 0 76.2 22 13 9 206 QUAL 0 76.3 36 16 20 199 QUAL 0 76.4 30 16 14 166 QUAL 0 76.5 27 12 15 204 QUAL 0 76.6 31 16 15 209 QUAL 0 76.7 23 9 14 161 QUAL 0 76.8 26 15 11 208 QUAL 0 76.9 29 13 16 174 QUAL 0 77.0 24 12 12 196 QUAL 0 77.1 23 13 10 170 QUAL 0 77.2 22 8 14 204 QUAL 0 77.3 18 9 9 169 QUAL 0 77.4 22 14 8 166 QUAL 0 77.5 20 12 8 179 QUAL 0 77.6 24 12 12 179 QUAL 0 77.7 17 7 10 155 QUAL 0 77.8 26 18 8 182 QUAL 0 77.9 18 10 8 138 QUAL 0 78.0 18 7 11 158 QUAL 0 78.1 16 8 8 130 QUAL 0 78.2 23 15 8 154 QUAL 0 78.3 25 16 9 139 QUAL 0 78.4 23 13 10 145 QUAL 0 78.5 20 13 7 171 QUAL 0 78.6 18 10 8 163 QUAL 0 78.7 14 8 6 143 QUAL 0 78.8 21 8 13 155 QUAL 0 78.9 21 9 12 151 QUAL 0 79.0 21 8 13 177 QUAL 0 79.1 17 7 10 170 QUAL 0 79.2 24 10 14 178 QUAL 0 79.3 17 8 9 171 QUAL 0 79.4 24 8 16 160 QUAL 0 79.5 17 9 8 164 QUAL 0 79.6 18 10 8 178 QUAL 0 79.7 21 10 11 155 QUAL 0 79.8 26 13 13 133 QUAL 0 79.9 12 5 7 151 QUAL 0 80.0 18 11 7 162 QUAL 0 80.1 23 15 8 159 QUAL 0 80.2 18 9 9 136 QUAL 0 80.3 16 8 8 158 QUAL 0 80.4 10 5 5 136 QUAL 0 80.5 14 4 10 133 QUAL 0 80.6 15 7 8 175 QUAL 0 80.7 11 4 7 146 QUAL 0 80.8 15 7 8 133 QUAL 0 80.9 13 4 9 145 QUAL 0 81.0 11 3 8 121 QUAL 0 81.1 20 10 10 158 QUAL 0 81.2 12 9 3 169 QUAL 0 81.3 16 9 7 137 QUAL 0 81.4 10 4 6 146 QUAL 0 81.5 13 5 8 143 QUAL 0 81.6 14 8 6 147 QUAL 0 81.7 11 8 3 131 QUAL 0 81.8 14 11 3 139 QUAL 0 81.9 19 9 10 190 QUAL 0 82.0 14 6 8 180 QUAL 0 82.1 18 10 8 148 QUAL 0 82.2 17 7 10 182 QUAL 0 82.3 22 14 8 165 QUAL 0 82.4 14 10 4 151 QUAL 0 82.5 16 7 9 132 QUAL 0 82.6 9 3 6 170 QUAL 0 82.7 10 5 5 162 QUAL 0 82.8 17 10 7 159 QUAL 0 82.9 15 7 8 153 QUAL 0 83.0 10 8 2 153 QUAL 0 83.1 10 6 4 156 QUAL 0 83.2 15 6 9 144 QUAL 0 83.3 14 5 9 155 QUAL 0 83.4 17 6 11 140 QUAL 0 83.5 10 7 3 145 QUAL 0 83.6 16 8 8 139 QUAL 0 83.7 12 7 5 149 QUAL 0 83.8 12 5 7 152 QUAL 0 83.9 15 4 11 162 QUAL 0 84.0 14 6 8 122 QUAL 0 84.1 11 6 5 141 QUAL 0 84.2 21 10 11 186 QUAL 0 84.3 10 5 5 162 QUAL 0 84.4 14 8 6 157 QUAL 0 84.5 10 5 5 168 QUAL 0 84.6 18 8 10 157 QUAL 0 84.7 13 4 9 165 QUAL 0 84.8 12 5 7 171 QUAL 0 84.9 19 7 12 149 QUAL 0 85.0 15 7 8 170 QUAL 0 85.1 11 3 8 149 QUAL 0 85.2 15 5 10 162 QUAL 0 85.3 13 6 7 160 QUAL 0 85.4 16 8 8 164 QUAL 0 85.5 22 11 11 199 QUAL 0 85.6 15 6 9 161 QUAL 0 85.7 13 8 5 152 QUAL 0 85.8 14 5 9 172 QUAL 0 85.9 17 8 9 138 QUAL 0 86.0 20 7 13 148 QUAL 0 86.1 13 7 6 154 QUAL 0 86.2 15 11 4 114 QUAL 0 86.3 10 8 2 165 QUAL 0 86.4 24 13 11 188 QUAL 0 86.5 8 3 5 146 QUAL 0 86.6 13 7 6 154 QUAL 0 86.7 11 5 6 168 QUAL 0 86.8 9 3 6 187 QUAL 0 86.9 14 7 7 151 QUAL 0 87.0 11 5 6 150 QUAL 0 87.1 7 5 2 187 QUAL 0 87.2 15 9 6 170 QUAL 0 87.3 16 7 9 175 QUAL 0 87.4 17 6 11 194 QUAL 0 87.5 11 6 5 180 QUAL 0 87.6 11 5 6 158 QUAL 0 87.7 5 1 4 165 QUAL 0 87.8 15 8 7 163 QUAL 0 87.9 16 7 9 188 QUAL 0 88.0 16 7 9 155 QUAL 0 88.1 7 4 3 161 QUAL 0 88.2 12 5 7 163 QUAL 0 88.3 11 3 8 156 QUAL 0 88.4 14 5 9 163 QUAL 0 88.5 12 6 6 192 QUAL 0 88.6 10 6 4 193 QUAL 0 88.7 13 4 9 180 QUAL 0 88.8 11 7 4 169 QUAL 0 88.9 14 6 8 190 QUAL 0 89.0 12 6 6 184 QUAL 0 89.1 6 3 3 170 QUAL 0 89.2 11 5 6 176 QUAL 0 89.3 12 9 3 177 QUAL 0 89.4 13 8 5 178 QUAL 0 89.5 13 6 7 168 QUAL 0 89.6 15 9 6 189 QUAL 0 89.7 7 3 4 165 QUAL 0 89.8 7 4 3 164 QUAL 0 89.9 25 11 14 183 QUAL 0 90.0 4 1 3 186 QUAL 0 90.1 14 3 11 232 QUAL 0 90.2 10 3 7 175 QUAL 0 90.3 15 9 6 180 QUAL 0 90.4 11 3 8 186 QUAL 0 90.5 13 4 9 190 QUAL 0 90.6 7 3 4 161 QUAL 0 90.7 12 4 8 212 QUAL 0 90.8 10 6 4 156 QUAL 0 90.9 16 4 12 214 QUAL 0 91.0 9 5 4 193 QUAL 0 91.1 14 6 8 165 QUAL 0 91.2 14 8 6 190 QUAL 0 91.3 8 5 3 169 QUAL 0 91.4 10 6 4 193 QUAL 0 91.5 11 6 5 169 QUAL 0 91.6 18 11 7 196 QUAL 0 91.7 8 3 5 152 QUAL 0 91.8 15 6 9 203 QUAL 0 91.9 8 6 2 212 QUAL 0 92.0 11 6 5 147 QUAL 0 92.1 4 3 1 169 QUAL 0 92.2 12 4 8 175 QUAL 0 92.3 14 6 8 203 QUAL 0 92.4 15 9 6 195 QUAL 0 92.5 19 3 16 191 QUAL 0 92.6 13 5 8 207 QUAL 0 92.7 15 8 7 188 QUAL 0 92.8 7 4 3 179 QUAL 0 92.9 20 6 14 185 QUAL 0 93.0 9 5 4 217 QUAL 0 93.1 10 6 4 173 QUAL 0 93.2 6 3 3 170 QUAL 0 93.3 15 9 6 194 QUAL 0 93.4 10 4 6 221 QUAL 0 93.5 11 0 11 196 QUAL 0 93.6 16 8 8 209 QUAL 0 93.7 8 2 6 205 QUAL 0 93.8 12 6 6 207 QUAL 0 93.9 13 10 3 187 QUAL 0 94.0 5 2 3 189 QUAL 0 94.1 4 2 2 205 QUAL 0 94.2 5 3 2 174 QUAL 0 94.3 12 5 7 203 QUAL 0 94.4 19 9 10 203 QUAL 0 94.5 13 6 7 203 QUAL 0 94.6 10 5 5 156 QUAL 0 94.7 5 1 4 196 QUAL 0 94.8 10 6 4 229 QUAL 0 94.9 8 5 3 202 QUAL 0 95.0 10 5 5 242 QUAL 0 95.1 8 4 4 189 QUAL 0 95.2 11 3 8 226 QUAL 0 95.3 15 7 8 208 QUAL 0 95.4 13 7 6 187 QUAL 0 95.5 7 3 4 201 QUAL 0 95.6 10 6 4 167 QUAL 0 95.7 13 4 9 208 QUAL 0 95.8 5 4 1 197 QUAL 0 95.9 8 3 5 182 QUAL 0 96.0 16 7 9 214 QUAL 0 96.1 12 5 7 183 QUAL 0 96.2 12 5 7 218 QUAL 0 96.3 16 7 9 228 QUAL 0 96.4 9 4 5 207 QUAL 0 96.5 6 3 3 194 QUAL 0 96.6 23 9 14 239 QUAL 0 96.7 19 5 14 242 QUAL 0 96.8 13 5 8 239 QUAL 0 96.9 9 4 5 212 QUAL 0 97.0 12 4 8 206 QUAL 0 97.1 7 4 3 209 QUAL 0 97.2 13 7 6 219 QUAL 0 97.3 6 0 6 263 QUAL 0 97.4 18 11 7 182 QUAL 0 97.5 8 4 4 233 QUAL 0 97.6 8 4 4 186 QUAL 0 97.7 8 4 4 270 QUAL 0 97.8 16 9 7 212 QUAL 0 97.9 10 5 5 240 QUAL 0 98.0 9 5 4 215 QUAL 0 98.1 9 5 4 194 QUAL 0 98.2 8 3 5 224 QUAL 0 98.3 6 3 3 197 QUAL 0 98.4 12 6 6 227 QUAL 0 98.5 13 8 5 215 QUAL 0 98.6 7 5 2 239 QUAL 0 98.7 6 4 2 246 QUAL 0 98.8 6 2 4 230 QUAL 0 98.9 18 9 9 194 QUAL 0 99.0 41389 16386 25003 103467 # IDD, InDel distribution: # IDD [2]id [3]length (deletions negative) [4]number of sites [5]number of genotypes [6]mean VAF IDD 0 -60 304 304 0.87 IDD 0 -59 10 10 0.70 IDD 0 -58 29 29 0.74 IDD 0 -57 18 18 0.61 IDD 0 -56 46 46 0.65 IDD 0 -55 31 31 0.66 IDD 0 -54 56 56 0.64 IDD 0 -53 41 41 0.63 IDD 0 -52 78 78 0.66 IDD 0 -51 48 48 0.68 IDD 0 -50 108 108 0.62 IDD 0 -49 114 114 0.60 IDD 0 -48 155 155 0.60 IDD 0 -47 72 72 0.62 IDD 0 -46 112 112 0.64 IDD 0 -45 95 95 0.61 IDD 0 -44 146 146 0.63 IDD 0 -43 84 84 0.62 IDD 0 -42 179 179 0.62 IDD 0 -41 119 119 0.64 IDD 0 -40 308 308 0.62 IDD 0 -39 139 139 0.62 IDD 0 -38 254 254 0.60 IDD 0 -37 157 157 0.63 IDD 0 -36 374 374 0.60 IDD 0 -35 185 185 0.58 IDD 0 -34 310 310 0.60 IDD 0 -33 193 193 0.60 IDD 0 -32 502 502 0.58 IDD 0 -31 224 224 0.62 IDD 0 -30 614 614 0.58 IDD 0 -29 275 275 0.60 IDD 0 -28 763 763 0.58 IDD 0 -27 350 350 0.59 IDD 0 -26 684 684 0.58 IDD 0 -25 490 490 0.60 IDD 0 -24 1266 1266 0.57 IDD 0 -23 429 429 0.59 IDD 0 -22 1013 1013 0.55 IDD 0 -21 550 550 0.59 IDD 0 -20 2123 2123 0.55 IDD 0 -19 699 699 0.56 IDD 0 -18 1848 1848 0.55 IDD 0 -17 881 881 0.57 IDD 0 -16 3338 3338 0.54 IDD 0 -15 1865 1865 0.56 IDD 0 -14 3058 3058 0.53 IDD 0 -13 1673 1673 0.55 IDD 0 -12 7019 7019 0.53 IDD 0 -11 2088 2088 0.54 IDD 0 -10 6522 6522 0.52 IDD 0 -9 3472 3472 0.55 IDD 0 -8 12105 12105 0.54 IDD 0 -7 4363 4363 0.54 IDD 0 -6 14166 14166 0.54 IDD 0 -5 12458 12458 0.58 IDD 0 -4 45713 45713 0.58 IDD 0 -3 29454 29454 0.56 IDD 0 -2 79838 79838 0.56 IDD 0 -1 214380 214380 0.62 IDD 0 1 212055 4289568 0.71 IDD 0 2 78449 78449 0.54 IDD 0 3 27123 27123 0.57 IDD 0 4 43824 43824 0.57 IDD 0 5 11231 11231 0.58 IDD 0 6 13517 13517 0.49 IDD 0 7 3730 3730 0.52 IDD 0 8 11828 11828 0.49 IDD 0 9 3014 3014 0.54 IDD 0 10 6063 6063 0.47 IDD 0 11 1737 1737 0.52 IDD 0 12 6627 6627 0.47 IDD 0 13 1276 1276 0.53 IDD 0 14 2638 2638 0.45 IDD 0 15 1626 1626 0.53 IDD 0 16 3184 3184 0.47 IDD 0 17 765 765 0.56 IDD 0 18 1656 1656 0.45 IDD 0 19 571 571 0.59 IDD 0 20 2083 2083 0.45 IDD 0 21 599 599 0.57 IDD 0 22 864 864 0.45 IDD 0 23 386 386 0.58 IDD 0 24 1346 1346 0.46 IDD 0 25 458 458 0.54 IDD 0 26 640 640 0.47 IDD 0 27 339 339 0.59 IDD 0 28 761 761 0.45 IDD 0 29 248 248 0.58 IDD 0 30 593 593 0.47 IDD 0 31 221 221 0.57 IDD 0 32 474 474 0.46 IDD 0 33 185 185 0.53 IDD 0 34 290 290 0.49 IDD 0 35 197 197 0.53 IDD 0 36 355 355 0.47 IDD 0 37 157 157 0.58 IDD 0 38 225 225 0.49 IDD 0 39 130 130 0.55 IDD 0 40 310 310 0.50 IDD 0 41 120 120 0.58 IDD 0 42 177 177 0.53 IDD 0 43 86 86 0.54 IDD 0 44 163 163 0.48 IDD 0 45 101 101 0.53 IDD 0 46 138 138 0.49 IDD 0 47 73 73 0.55 IDD 0 48 186 186 0.51 IDD 0 49 132 132 0.55 IDD 0 50 141 141 0.49 IDD 0 51 77 77 0.53 IDD 0 52 133 133 0.53 IDD 0 53 65 65 0.56 IDD 0 54 104 104 0.51 IDD 0 55 56 56 0.52 IDD 0 56 95 95 0.50 IDD 0 57 67 67 0.49 IDD 0 58 73 73 0.54 IDD 0 59 62 62 0.57 IDD 0 60 4480 4481 0.48 # ST, Substitution types: # ST [2]id [3]type [4]count ST 0 A>C 176693 ST 0 A>G 650974 ST 0 A>T 160040 ST 0 C>A 179589 ST 0 C>G 186027 ST 0 C>T 683419 ST 0 G>A 679519 ST 0 G>C 183732 ST 0 G>T 184073 ST 0 T>A 159744 ST 0 T>C 652612 ST 0 T>G 181091 # DP, Depth distribution # DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites (%) DP 0 2 337 0.006762 0 0.000000 DP 0 3 526 0.010554 0 0.000000 DP 0 4 966 0.019383 0 0.000000 DP 0 5 1857 0.037261 0 0.000000 DP 0 6 3206 0.064328 0 0.000000 DP 0 7 4060 0.081464 0 0.000000 DP 0 8 5053 0.101388 0 0.000000 DP 0 9 5197 0.104278 0 0.000000 DP 0 10 5495 0.110257 0 0.000000 DP 0 11 5857 0.117521 0 0.000000 DP 0 12 6795 0.136342 0 0.000000 DP 0 13 7563 0.151751 0 0.000000 DP 0 14 8466 0.169870 0 0.000000 DP 0 15 10314 0.206950 0 0.000000 DP 0 16 11891 0.238593 0 0.000000 DP 0 17 13300 0.266864 0 0.000000 DP 0 18 14867 0.298306 0 0.000000 DP 0 19 17600 0.353144 0 0.000000 DP 0 20 19825 0.397788 0 0.000000 DP 0 21 22073 0.442894 0 0.000000 DP 0 22 24860 0.498816 0 0.000000 DP 0 23 27702 0.555840 0 0.000000 DP 0 24 32029 0.642661 0 0.000000 DP 0 25 36200 0.726353 0 0.000000 DP 0 26 41931 0.841345 0 0.000000 DP 0 27 48250 0.968136 0 0.000000 DP 0 28 56719 1.138066 0 0.000000 DP 0 29 66541 1.335144 0 0.000000 DP 0 30 77505 1.555137 0 0.000000 DP 0 31 88971 1.785202 0 0.000000 DP 0 32 103692 2.080579 0 0.000000 DP 0 33 118771 2.383139 0 0.000000 DP 0 34 136073 2.730303 0 0.000000 DP 0 35 152948 3.068900 0 0.000000 DP 0 36 170177 3.414599 0 0.000000 DP 0 37 185430 3.720650 0 0.000000 DP 0 38 198576 3.984425 0 0.000000 DP 0 39 210086 4.215373 0 0.000000 DP 0 40 218928 4.392787 0 0.000000 DP 0 41 225758 4.529831 0 0.000000 DP 0 42 225141 4.517451 0 0.000000 DP 0 43 225068 4.515986 0 0.000000 DP 0 44 219333 4.400914 0 0.000000 DP 0 45 211691 4.247577 0 0.000000 DP 0 46 200754 4.028126 0 0.000000 DP 0 47 189826 3.808856 0 0.000000 DP 0 48 173629 3.483864 0 0.000000 DP 0 49 158065 3.171572 0 0.000000 DP 0 50 141686 2.842928 0 0.000000 DP 0 51 124097 2.490005 0 0.000000 DP 0 52 108314 2.173319 0 0.000000 DP 0 53 92045 1.846882 0 0.000000 DP 0 54 78151 1.568099 0 0.000000 DP 0 55 65277 1.309782 0 0.000000 DP 0 56 53137 1.066193 0 0.000000 DP 0 57 43289 0.868593 0 0.000000 DP 0 58 35261 0.707511 0 0.000000 DP 0 59 27809 0.557987 0 0.000000 DP 0 60 21975 0.440928 0 0.000000 DP 0 61 17242 0.345960 0 0.000000 DP 0 62 13509 0.271058 0 0.000000 DP 0 63 10581 0.212308 0 0.000000 DP 0 64 8163 0.163790 0 0.000000 DP 0 65 6422 0.128857 0 0.000000 DP 0 66 5366 0.107669 0 0.000000 DP 0 67 3872 0.077692 0 0.000000 DP 0 68 3353 0.067278 0 0.000000 DP 0 69 3238 0.064970 0 0.000000 DP 0 70 2401 0.048176 0 0.000000 DP 0 71 2212 0.044384 0 0.000000 DP 0 72 2070 0.041535 0 0.000000 DP 0 73 1618 0.032465 0 0.000000 DP 0 74 1514 0.030378 0 0.000000 DP 0 75 1558 0.031261 0 0.000000 DP 0 76 1360 0.027288 0 0.000000 DP 0 77 1357 0.027228 0 0.000000 DP 0 78 1376 0.027609 0 0.000000 DP 0 79 1507 0.030238 0 0.000000 DP 0 80 1479 0.029676 0 0.000000 DP 0 81 1294 0.025964 0 0.000000 DP 0 82 1382 0.027730 0 0.000000 DP 0 83 1451 0.029114 0 0.000000 DP 0 84 1262 0.025322 0 0.000000 DP 0 85 1302 0.026125 0 0.000000 DP 0 86 1223 0.024539 0 0.000000 DP 0 87 1219 0.024459 0 0.000000 DP 0 88 1171 0.023496 0 0.000000 DP 0 89 1190 0.023877 0 0.000000 DP 0 90 970 0.019463 0 0.000000 DP 0 91 1212 0.024319 0 0.000000 DP 0 92 1148 0.023035 0 0.000000 DP 0 93 865 0.017356 0 0.000000 DP 0 94 851 0.017075 0 0.000000 DP 0 95 873 0.017517 0 0.000000 DP 0 96 788 0.015811 0 0.000000 DP 0 97 930 0.018660 0 0.000000 DP 0 98 801 0.016072 0 0.000000 DP 0 99 780 0.015651 0 0.000000 DP 0 100 813 0.016313 0 0.000000 DP 0 101 883 0.017717 0 0.000000 DP 0 102 857 0.017196 0 0.000000 DP 0 103 823 0.016513 0 0.000000 DP 0 104 760 0.015249 0 0.000000 DP 0 105 683 0.013704 0 0.000000 DP 0 106 735 0.014748 0 0.000000 DP 0 107 845 0.016955 0 0.000000 DP 0 108 998 0.020025 0 0.000000 DP 0 109 691 0.013865 0 0.000000 DP 0 110 746 0.014968 0 0.000000 DP 0 111 923 0.018520 0 0.000000 DP 0 112 660 0.013243 0 0.000000 DP 0 113 735 0.014748 0 0.000000 DP 0 114 847 0.016995 0 0.000000 DP 0 115 890 0.017858 0 0.000000 DP 0 116 804 0.016132 0 0.000000 DP 0 117 812 0.016293 0 0.000000 DP 0 118 723 0.014507 0 0.000000 DP 0 119 631 0.012661 0 0.000000 DP 0 120 770 0.015450 0 0.000000 DP 0 121 893 0.017918 0 0.000000 DP 0 122 779 0.015631 0 0.000000 DP 0 123 623 0.012500 0 0.000000 DP 0 124 657 0.013183 0 0.000000 DP 0 125 675 0.013544 0 0.000000 DP 0 126 731 0.014668 0 0.000000 DP 0 127 692 0.013885 0 0.000000 DP 0 128 656 0.013163 0 0.000000 DP 0 129 538 0.010795 0 0.000000 DP 0 130 524 0.010514 0 0.000000 DP 0 131 556 0.011156 0 0.000000 DP 0 132 525 0.010534 0 0.000000 DP 0 133 710 0.014246 0 0.000000 DP 0 134 689 0.013825 0 0.000000 DP 0 135 571 0.011457 0 0.000000 DP 0 136 584 0.011718 0 0.000000 DP 0 137 688 0.013805 0 0.000000 DP 0 138 722 0.014487 0 0.000000 DP 0 139 572 0.011477 0 0.000000 DP 0 140 648 0.013002 0 0.000000 DP 0 141 554 0.011116 0 0.000000 DP 0 142 669 0.013423 0 0.000000 DP 0 143 575 0.011537 0 0.000000 DP 0 144 660 0.013243 0 0.000000 DP 0 145 649 0.013022 0 0.000000 DP 0 146 435 0.008728 0 0.000000 DP 0 147 530 0.010634 0 0.000000 DP 0 148 699 0.014025 0 0.000000 DP 0 149 577 0.011577 0 0.000000 DP 0 150 457 0.009170 0 0.000000 DP 0 151 395 0.007926 0 0.000000 DP 0 152 484 0.009711 0 0.000000 DP 0 153 607 0.012179 0 0.000000 DP 0 154 469 0.009410 0 0.000000 DP 0 155 390 0.007825 0 0.000000 DP 0 156 399 0.008006 0 0.000000 DP 0 157 453 0.009089 0 0.000000 DP 0 158 682 0.013684 0 0.000000 DP 0 159 529 0.010614 0 0.000000 DP 0 160 579 0.011618 0 0.000000 DP 0 161 556 0.011156 0 0.000000 DP 0 162 484 0.009711 0 0.000000 DP 0 163 404 0.008106 0 0.000000 DP 0 164 545 0.010935 0 0.000000 DP 0 165 518 0.010394 0 0.000000 DP 0 166 411 0.008247 0 0.000000 DP 0 167 392 0.007865 0 0.000000 DP 0 168 349 0.007003 0 0.000000 DP 0 169 370 0.007424 0 0.000000 DP 0 170 291 0.005839 0 0.000000 DP 0 171 414 0.008307 0 0.000000 DP 0 172 380 0.007625 0 0.000000 DP 0 173 346 0.006942 0 0.000000 DP 0 174 481 0.009651 0 0.000000 DP 0 175 648 0.013002 0 0.000000 DP 0 176 376 0.007544 0 0.000000 DP 0 177 360 0.007223 0 0.000000 DP 0 178 361 0.007243 0 0.000000 DP 0 179 379 0.007605 0 0.000000 DP 0 180 324 0.006501 0 0.000000 DP 0 181 233 0.004675 0 0.000000 DP 0 182 219 0.004394 0 0.000000 DP 0 183 319 0.006401 0 0.000000 DP 0 184 354 0.007103 0 0.000000 DP 0 185 312 0.006260 0 0.000000 DP 0 186 258 0.005177 0 0.000000 DP 0 187 194 0.003893 0 0.000000 DP 0 188 271 0.005438 0 0.000000 DP 0 189 289 0.005799 0 0.000000 DP 0 190 215 0.004314 0 0.000000 DP 0 191 262 0.005257 0 0.000000 DP 0 192 202 0.004053 0 0.000000 DP 0 193 180 0.003612 0 0.000000 DP 0 194 153 0.003070 0 0.000000 DP 0 195 169 0.003391 0 0.000000 DP 0 196 162 0.003251 0 0.000000 DP 0 197 231 0.004635 0 0.000000 DP 0 198 228 0.004575 0 0.000000 DP 0 199 198 0.003973 0 0.000000 DP 0 200 120 0.002408 0 0.000000 DP 0 201 163 0.003271 0 0.000000 DP 0 202 172 0.003451 0 0.000000 DP 0 203 166 0.003331 0 0.000000 DP 0 204 217 0.004354 0 0.000000 DP 0 205 217 0.004354 0 0.000000 DP 0 206 214 0.004294 0 0.000000 DP 0 207 222 0.004454 0 0.000000 DP 0 208 256 0.005137 0 0.000000 DP 0 209 247 0.004956 0 0.000000 DP 0 210 191 0.003832 0 0.000000 DP 0 211 171 0.003431 0 0.000000 DP 0 212 204 0.004093 0 0.000000 DP 0 213 149 0.002990 0 0.000000 DP 0 214 144 0.002889 0 0.000000 DP 0 215 135 0.002709 0 0.000000 DP 0 216 123 0.002468 0 0.000000 DP 0 217 140 0.002809 0 0.000000 DP 0 218 130 0.002608 0 0.000000 DP 0 219 132 0.002649 0 0.000000 DP 0 220 144 0.002889 0 0.000000 DP 0 221 188 0.003772 0 0.000000 DP 0 222 207 0.004153 0 0.000000 DP 0 223 124 0.002488 0 0.000000 DP 0 224 134 0.002689 0 0.000000 DP 0 225 142 0.002849 0 0.000000 DP 0 226 95 0.001906 0 0.000000 DP 0 227 120 0.002408 0 0.000000 DP 0 228 123 0.002468 0 0.000000 DP 0 229 113 0.002267 0 0.000000 DP 0 230 126 0.002528 0 0.000000 DP 0 231 101 0.002027 0 0.000000 DP 0 232 108 0.002167 0 0.000000 DP 0 233 96 0.001926 0 0.000000 DP 0 234 125 0.002508 0 0.000000 DP 0 235 105 0.002107 0 0.000000 DP 0 236 102 0.002047 0 0.000000 DP 0 237 114 0.002287 0 0.000000 DP 0 238 138 0.002769 0 0.000000 DP 0 239 116 0.002328 0 0.000000 DP 0 240 128 0.002568 0 0.000000 DP 0 241 101 0.002027 0 0.000000 DP 0 242 108 0.002167 0 0.000000 DP 0 243 145 0.002909 0 0.000000 DP 0 244 153 0.003070 0 0.000000 DP 0 245 142 0.002849 0 0.000000 DP 0 246 121 0.002428 0 0.000000 DP 0 247 157 0.003150 0 0.000000 DP 0 248 190 0.003812 0 0.000000 DP 0 249 122 0.002448 0 0.000000 DP 0 250 162 0.003251 0 0.000000 DP 0 251 153 0.003070 0 0.000000 DP 0 252 136 0.002729 0 0.000000 DP 0 253 144 0.002889 0 0.000000 DP 0 254 129 0.002588 0 0.000000 DP 0 255 162 0.003251 0 0.000000 DP 0 256 222 0.004454 0 0.000000 DP 0 257 166 0.003331 0 0.000000 DP 0 258 143 0.002869 0 0.000000 DP 0 259 115 0.002307 0 0.000000 DP 0 260 141 0.002829 0 0.000000 DP 0 261 103 0.002067 0 0.000000 DP 0 262 90 0.001806 0 0.000000 DP 0 263 124 0.002488 0 0.000000 DP 0 264 135 0.002709 0 0.000000 DP 0 265 125 0.002508 0 0.000000 DP 0 266 119 0.002388 0 0.000000 DP 0 267 129 0.002588 0 0.000000 DP 0 268 149 0.002990 0 0.000000 DP 0 269 116 0.002328 0 0.000000 DP 0 270 149 0.002990 0 0.000000 DP 0 271 203 0.004073 0 0.000000 DP 0 272 123 0.002468 0 0.000000 DP 0 273 99 0.001986 0 0.000000 DP 0 274 92 0.001846 0 0.000000 DP 0 275 107 0.002147 0 0.000000 DP 0 276 115 0.002307 0 0.000000 DP 0 277 130 0.002608 0 0.000000 DP 0 278 140 0.002809 0 0.000000 DP 0 279 134 0.002689 0 0.000000 DP 0 280 130 0.002608 0 0.000000 DP 0 281 150 0.003010 0 0.000000 DP 0 282 141 0.002829 0 0.000000 DP 0 283 114 0.002287 0 0.000000 DP 0 284 115 0.002307 0 0.000000 DP 0 285 150 0.003010 0 0.000000 DP 0 286 73 0.001465 0 0.000000 DP 0 287 107 0.002147 0 0.000000 DP 0 288 73 0.001465 0 0.000000 DP 0 289 74 0.001485 0 0.000000 DP 0 290 75 0.001505 0 0.000000 DP 0 291 78 0.001565 0 0.000000 DP 0 292 74 0.001485 0 0.000000 DP 0 293 124 0.002488 0 0.000000 DP 0 294 169 0.003391 0 0.000000 DP 0 295 100 0.002006 0 0.000000 DP 0 296 125 0.002508 0 0.000000 DP 0 297 199 0.003993 0 0.000000 DP 0 298 89 0.001786 0 0.000000 DP 0 299 82 0.001645 0 0.000000 DP 0 300 59 0.001184 0 0.000000 DP 0 301 84 0.001685 0 0.000000 DP 0 302 114 0.002287 0 0.000000 DP 0 303 112 0.002247 0 0.000000 DP 0 304 191 0.003832 0 0.000000 DP 0 305 175 0.003511 0 0.000000 DP 0 306 119 0.002388 0 0.000000 DP 0 307 90 0.001806 0 0.000000 DP 0 308 81 0.001625 0 0.000000 DP 0 309 75 0.001505 0 0.000000 DP 0 310 88 0.001766 0 0.000000 DP 0 311 73 0.001465 0 0.000000 DP 0 312 52 0.001043 0 0.000000 DP 0 313 58 0.001164 0 0.000000 DP 0 314 75 0.001505 0 0.000000 DP 0 315 58 0.001164 0 0.000000 DP 0 316 81 0.001625 0 0.000000 DP 0 317 82 0.001645 0 0.000000 DP 0 318 71 0.001425 0 0.000000 DP 0 319 75 0.001505 0 0.000000 DP 0 320 83 0.001665 0 0.000000 DP 0 321 93 0.001866 0 0.000000 DP 0 322 111 0.002227 0 0.000000 DP 0 323 107 0.002147 0 0.000000 DP 0 324 98 0.001966 0 0.000000 DP 0 325 116 0.002328 0 0.000000 DP 0 326 160 0.003210 0 0.000000 DP 0 327 209 0.004194 0 0.000000 DP 0 328 106 0.002127 0 0.000000 DP 0 329 82 0.001645 0 0.000000 DP 0 330 94 0.001886 0 0.000000 DP 0 331 123 0.002468 0 0.000000 DP 0 332 156 0.003130 0 0.000000 DP 0 333 150 0.003010 0 0.000000 DP 0 334 181 0.003632 0 0.000000 DP 0 335 216 0.004334 0 0.000000 DP 0 336 261 0.005237 0 0.000000 DP 0 337 117 0.002348 0 0.000000 DP 0 338 80 0.001605 0 0.000000 DP 0 339 87 0.001746 0 0.000000 DP 0 340 116 0.002328 0 0.000000 DP 0 341 98 0.001966 0 0.000000 DP 0 342 118 0.002368 0 0.000000 DP 0 343 173 0.003471 0 0.000000 DP 0 344 107 0.002147 0 0.000000 DP 0 345 124 0.002488 0 0.000000 DP 0 346 132 0.002649 0 0.000000 DP 0 347 169 0.003391 0 0.000000 DP 0 348 80 0.001605 0 0.000000 DP 0 349 66 0.001324 0 0.000000 DP 0 350 53 0.001063 0 0.000000 DP 0 351 66 0.001324 0 0.000000 DP 0 352 66 0.001324 0 0.000000 DP 0 353 77 0.001545 0 0.000000 DP 0 354 103 0.002067 0 0.000000 DP 0 355 109 0.002187 0 0.000000 DP 0 356 160 0.003210 0 0.000000 DP 0 357 89 0.001786 0 0.000000 DP 0 358 65 0.001304 0 0.000000 DP 0 359 55 0.001104 0 0.000000 DP 0 360 56 0.001124 0 0.000000 DP 0 361 97 0.001946 0 0.000000 DP 0 362 80 0.001605 0 0.000000 DP 0 363 76 0.001525 0 0.000000 DP 0 364 66 0.001324 0 0.000000 DP 0 365 65 0.001304 0 0.000000 DP 0 366 129 0.002588 0 0.000000 DP 0 367 107 0.002147 0 0.000000 DP 0 368 64 0.001284 0 0.000000 DP 0 369 76 0.001525 0 0.000000 DP 0 370 63 0.001264 0 0.000000 DP 0 371 80 0.001605 0 0.000000 DP 0 372 103 0.002067 0 0.000000 DP 0 373 93 0.001866 0 0.000000 DP 0 374 81 0.001625 0 0.000000 DP 0 375 60 0.001204 0 0.000000 DP 0 376 63 0.001264 0 0.000000 DP 0 377 61 0.001224 0 0.000000 DP 0 378 40 0.000803 0 0.000000 DP 0 379 43 0.000863 0 0.000000 DP 0 380 58 0.001164 0 0.000000 DP 0 381 62 0.001244 0 0.000000 DP 0 382 81 0.001625 0 0.000000 DP 0 383 79 0.001585 0 0.000000 DP 0 384 69 0.001384 0 0.000000 DP 0 385 59 0.001184 0 0.000000 DP 0 386 60 0.001204 0 0.000000 DP 0 387 86 0.001726 0 0.000000 DP 0 388 75 0.001505 0 0.000000 DP 0 389 61 0.001224 0 0.000000 DP 0 390 88 0.001766 0 0.000000 DP 0 391 131 0.002629 0 0.000000 DP 0 392 67 0.001344 0 0.000000 DP 0 393 91 0.001826 0 0.000000 DP 0 394 88 0.001766 0 0.000000 DP 0 395 78 0.001565 0 0.000000 DP 0 396 74 0.001485 0 0.000000 DP 0 397 70 0.001405 0 0.000000 DP 0 398 63 0.001264 0 0.000000 DP 0 399 65 0.001304 0 0.000000 DP 0 400 87 0.001746 0 0.000000 DP 0 401 91 0.001826 0 0.000000 DP 0 402 62 0.001244 0 0.000000 DP 0 403 54 0.001084 0 0.000000 DP 0 404 73 0.001465 0 0.000000 DP 0 405 28 0.000562 0 0.000000 DP 0 406 30 0.000602 0 0.000000 DP 0 407 40 0.000803 0 0.000000 DP 0 408 33 0.000662 0 0.000000 DP 0 409 38 0.000762 0 0.000000 DP 0 410 46 0.000923 0 0.000000 DP 0 411 48 0.000963 0 0.000000 DP 0 412 36 0.000722 0 0.000000 DP 0 413 31 0.000622 0 0.000000 DP 0 414 35 0.000702 0 0.000000 DP 0 415 48 0.000963 0 0.000000 DP 0 416 35 0.000702 0 0.000000 DP 0 417 24 0.000482 0 0.000000 DP 0 418 27 0.000542 0 0.000000 DP 0 419 37 0.000742 0 0.000000 DP 0 420 39 0.000783 0 0.000000 DP 0 421 38 0.000762 0 0.000000 DP 0 422 51 0.001023 0 0.000000 DP 0 423 43 0.000863 0 0.000000 DP 0 424 54 0.001084 0 0.000000 DP 0 425 46 0.000923 0 0.000000 DP 0 426 44 0.000883 0 0.000000 DP 0 427 51 0.001023 0 0.000000 DP 0 428 33 0.000662 0 0.000000 DP 0 429 34 0.000682 0 0.000000 DP 0 430 34 0.000682 0 0.000000 DP 0 431 52 0.001043 0 0.000000 DP 0 432 55 0.001104 0 0.000000 DP 0 433 47 0.000943 0 0.000000 DP 0 434 46 0.000923 0 0.000000 DP 0 435 44 0.000883 0 0.000000 DP 0 436 46 0.000923 0 0.000000 DP 0 437 34 0.000682 0 0.000000 DP 0 438 52 0.001043 0 0.000000 DP 0 439 47 0.000943 0 0.000000 DP 0 440 33 0.000662 0 0.000000 DP 0 441 40 0.000803 0 0.000000 DP 0 442 38 0.000762 0 0.000000 DP 0 443 53 0.001063 0 0.000000 DP 0 444 66 0.001324 0 0.000000 DP 0 445 29 0.000582 0 0.000000 DP 0 446 50 0.001003 0 0.000000 DP 0 447 42 0.000843 0 0.000000 DP 0 448 25 0.000502 0 0.000000 DP 0 449 32 0.000642 0 0.000000 DP 0 450 38 0.000762 0 0.000000 DP 0 451 36 0.000722 0 0.000000 DP 0 452 40 0.000803 0 0.000000 DP 0 453 55 0.001104 0 0.000000 DP 0 454 31 0.000622 0 0.000000 DP 0 455 33 0.000662 0 0.000000 DP 0 456 37 0.000742 0 0.000000 DP 0 457 36 0.000722 0 0.000000 DP 0 458 39 0.000783 0 0.000000 DP 0 459 57 0.001144 0 0.000000 DP 0 460 33 0.000662 0 0.000000 DP 0 461 34 0.000682 0 0.000000 DP 0 462 23 0.000461 0 0.000000 DP 0 463 44 0.000883 0 0.000000 DP 0 464 40 0.000803 0 0.000000 DP 0 465 28 0.000562 0 0.000000 DP 0 466 28 0.000562 0 0.000000 DP 0 467 37 0.000742 0 0.000000 DP 0 468 34 0.000682 0 0.000000 DP 0 469 22 0.000441 0 0.000000 DP 0 470 29 0.000582 0 0.000000 DP 0 471 29 0.000582 0 0.000000 DP 0 472 24 0.000482 0 0.000000 DP 0 473 30 0.000602 0 0.000000 DP 0 474 40 0.000803 0 0.000000 DP 0 475 37 0.000742 0 0.000000 DP 0 476 33 0.000662 0 0.000000 DP 0 477 25 0.000502 0 0.000000 DP 0 478 19 0.000381 0 0.000000 DP 0 479 24 0.000482 0 0.000000 DP 0 480 17 0.000341 0 0.000000 DP 0 481 26 0.000522 0 0.000000 DP 0 482 17 0.000341 0 0.000000 DP 0 483 23 0.000461 0 0.000000 DP 0 484 23 0.000461 0 0.000000 DP 0 485 16 0.000321 0 0.000000 DP 0 486 25 0.000502 0 0.000000 DP 0 487 35 0.000702 0 0.000000 DP 0 488 46 0.000923 0 0.000000 DP 0 489 38 0.000762 0 0.000000 DP 0 490 27 0.000542 0 0.000000 DP 0 491 24 0.000482 0 0.000000 DP 0 492 28 0.000562 0 0.000000 DP 0 493 23 0.000461 0 0.000000 DP 0 494 50 0.001003 0 0.000000 DP 0 495 34 0.000682 0 0.000000 DP 0 496 63 0.001264 0 0.000000 DP 0 497 67 0.001344 0 0.000000 DP 0 498 84 0.001685 0 0.000000 DP 0 499 73 0.001465 0 0.000000 DP 0 500 55 0.001104 0 0.000000 DP 0 >500 11476 0.230266 0 0.000000 # PSC, Per-sample counts. Note that the ref/het/hom counts include only SNPs, for indels see PSI. The rest include both SNPs and indels. # PSC [2]id [3]sample [4]nRefHom [5]nNonRefHom [6]nHets [7]nTransitions [8]nTransversions [9]nIndels [10]average depth [11]nSingletons [12]nHapRef [13]nHapAlt [14]nMissing PSC 0 HG002 0 1795312 2282201 2666524 1410989 906292 45.7 4983806 0 0 0 # PSI, Per-Sample Indels. Note that alt-het genotypes with both ins and del allele are counted twice, in both nInsHets and nDelHets. # PSI [2]id [3]sample [4]in-frame [5]out-frame [6]not applicable [7]out/(in+out) ratio [8]nInsHets [9]nDelHets [10]nInsAltHoms [11]nDelAltHoms PSI 0 HG002 0 0 0 0.00 297851 300916 150453 157072 # HWE # HWE [2]id [3]1st ALT allele frequency [4]Number of observations [5]25th percentile [6]median [7]75th percentile HWE 0 0.000000 2880968 0.990000 0.990000 0.990000 HWE 0 0.990000 2102838 0.000000 0.000000 0.000000 # VAF, Variant Allele Frequency determined as fraction of alternate reads in FORMAT/AD # VAF [2]id [3]sample [4]SNV VAF distribution [5]indel VAF distribution VAF 0 HG002 0,0,28,405,1712,6434,31248,98380,275604,460360,581912,445489,257523,88904,28563,7813,6638,9961,25196,89111,1662232 0,87,922,6059,19547,36967,60706,75284,102286,106209,100398,67135,42604,24292,21508,20703,23407,24593,31995,47988,93603