| 20260507 07:41:32.620 | INFO | Snapshot : (Legend) % CPU / Threads / ResMem GiB
| 20260507 07:41:32.621 | INFO | Snapshot : 0.0% / 3T / 0.0G
| 20260507 07:41:32.621 | INFO | Effective command line: /opt/pacbio/bin/baz2bam --splitControlRefLength=15000 --platform=REVIO --splitControlLength=10000 --stemLength=8 --minSubLength=100 --minHardAccuracy=-1 --minZmwLength=1 --process-log-interval=5000 --metadata=/data/icc/m84031_260506_033729_s1/metadata/m84031_260506_033729_s1_full_preview_23hr.metadata.xml --defaultZmwBatchSize=75 --maxInputQueueMB=3500 --flankLength=-1 --fileListStride=1 --statusfd=2 --startFileListIdx=0 --nProcs=24 --minSoftAccuracy=-1 --minFlankingScore=-1 --bamThreads=8 --minEmptyTime=60 --output=m84031_260506_033729_s1_full_preview_23hr --minInsertionLength=50 --bazThreads=2 --instrument-files-layout --maxNumZmwsToProcess=2147483647 --smrtMaskScoreThreshold=-1 --streamedBam --zmwOutputStride=0 --minSnr=0 --hqrfConfig=DEFAULT --process-log=NONE --emptyOutlierTime=3 --inlinePbi --whitelistZmwNum=0 --uuid=3aff3ffb-84a8-4d3d-9934-39ea4705feda --silent --whitelistZmwId=0 --samplePercent=100 --zmwBatchMB=250 --zmwHeaderBatchMB=10 --maxOutputQueueMB=5000 --log-level=INFO --log-file=/data/icc/m84031_260506_033729_s1/metadata/m84031_260506_033729_s1_full_preview_23hr.baz2bam.log /data/nrta/0/m84031_260506_033729_s1/pb_internal/baz/m84031_260506_033729_s1_full_preview.baz
| 20260507 07:41:32.621 | INFO | Start
| 20260507 07:41:32.621 | INFO | /opt/pacbio/bin/baz2bam --splitControlRefLength=15000 --platform=REVIO --splitControlLength=10000 --stemLength=8 --minSubLength=100 --minHardAccuracy=-1 --minZmwLength=1 --process-log-interval=5000 --metadata=/data/icc/m84031_260506_033729_s1/metadata/m84031_260506_033729_s1_full_preview_23hr.metadata.xml --defaultZmwBatchSize=75 --maxInputQueueMB=3500 --flankLength=-1 --fileListStride=1 --statusfd=2 --startFileListIdx=0 --nProcs=24 --minSoftAccuracy=-1 --minFlankingScore=-1 --bamThreads=8 --minEmptyTime=60 --output=m84031_260506_033729_s1_full_preview_23hr --minInsertionLength=50 --bazThreads=2 --instrument-files-layout --maxNumZmwsToProcess=2147483647 --smrtMaskScoreThreshold=-1 --streamedBam --zmwOutputStride=0 --minSnr=0 --hqrfConfig=DEFAULT --process-log=NONE --emptyOutlierTime=3 --inlinePbi --whitelistZmwNum=0 --uuid=3aff3ffb-84a8-4d3d-9934-39ea4705feda --silent --whitelistZmwId=0 --samplePercent=100 --zmwBatchMB=250 --zmwHeaderBatchMB=10 --maxOutputQueueMB=5000 --log-level=INFO --log-file=/data/icc/m84031_260506_033729_s1/metadata/m84031_260506_033729_s1_full_preview_23hr.baz2bam.log /data/nrta/0/m84031_260506_033729_s1/pb_internal/baz/m84031_260506_033729_s1_full_preview.baz
| 20260507 07:41:32.621 | INFO | commit hash: 2dc54f5a66f39b94662202d5514157d553e25f7d
| 20260507 07:41:32.621 | INFO | commit date: 2026-01-13 11:49:20 +0100
| 20260507 07:41:32.621 | INFO | Version: release/kestrel-13.5_2dc54f5a66f39b94662202d5514157d553e25f7d
| 20260507 07:41:32.621 | INFO | Roughly processing the first 2147483647 ZMWs, up to a slice boundary...
| 20260507 07:41:32.984 | INFO | Parsing "/data/icc/m84031_260506_033729_s1/metadata/m84031_260506_033729_s1_full_preview_23hr.metadata.xml"
| 20260507 07:41:32.986 | INFO | PPAAlgoConfig = {"adapterFinding":{"disableAdapterFinding":false,"leftAdapter":"CAACAACAACAACGGAGGAGGAGGAAAAG","rightAdapter":"CAACAACAACAACGGAGGAGGAGGAAAAG"},"controlFilter":{"disableControlFiltering":false,"leftAdapter":"TAGAGAGAGAAAAGGAGGAGGAGGCAACAACAACAACTCTCTCTA","rightAdapter":"TAGAGAGAGAAAAGGAGGAGGAGGCAACAACAACAACTCTCTCTA","sequence":"TCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGGCCGCATCCAGACTCAAATCAACGACCAGATCGCCTACCGGTTCAGCCATACCGGACTCCTCCTGCGATCCCTTCTGATACTGTCATCAGCATTACGTCATCCTCCGTCATGTCCGCCACATCCGGGGAAGCGGGGATAACTTCATTCCCGTCCGGGCCAAAGCGGACACCTCCGGCAAGCCCTGCCGCTTTCTGCAGCAGGCTCGCCAGCAGCGCACTGAGATCCAGCTGCCAGCGGGAAATACTGATGCGCAGCGCCGCCAGCGCATAAACGAAGCAGTCGAGTGCCTCATTGCGTCGCTTTTTGCTGTCCCACAGTATTTTTTTCCTGCCATCCACCCATTTTTCGACCTGCTCTTCAGCAGTCAGCTGCTGCGCTTCGGTCAGATCAAAAATAGGGTACCGAGCTCGAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTA"},"hqrf":{"method":"N2"},"inputFilter":{"minSnr":1.5},"outputFilter":{"zmwOutputStride":1}}
| 20260507 07:41:33.459 | INFO | 24 adapter callers have been configured with the standard method
| 20260507 07:41:33.461 | INFO | Created BAM Header comment:{
	"collection_metadata_xml" : "<suppressed>",
	"dataset_uuid" : "bb760677-ba7e-44bd-8c36-f064bb17bd60",
	"external_resources" : 
	[
		{
			"file_name" : "../metadata/m84031_260506_033729_s1_full_preview_23hr.sts.xml",
			"meta_type" : "PacBio.SubreadFile.ChipStatsFile"
		}
	],
	"name" : "baz2bam_ccs_sideband",
	"subreadset_name" : "Acq14-Cell5",
	"version" : "1.2",
	"zmws" : 2560
}
| 20260507 07:41:33.461 | INFO | bam file: -
| 20260507 07:41:33.461 | INFO | bamThreads = 8
| 20260507 07:41:33.461 | INFO | Writing streaming BAM file to stdout
| 20260507 07:41:33.472 | INFO | ZOFFSET_CART_HMM configured
| 20260507 07:41:33.472 | INFO | Creating sts.h5 file "pb_internal/m84031_260506_033729_s1_full_preview_23hr.sts.h5" with parameters numHoles:2560 numAnalogs:4 numFilters:1
| 20260507 07:41:33.475 | INFO | Starting Baz2bam.	MovieName: /data/nrta/0/m84031_260506_033729_s1/pb_internal/baz/m84031_260506_033729_s1_full_preview.baz,  BaseCallerVersion: 5.0.0,  BazWriterVersion: 0.0.0,  BazVersion: 2.6.2,  OutputPrefix: "m84031_260506_033729_s1_full_preview_23hr",  ProdFileLayout: Kestrel,  Baz2bamVersion: release/kestrel-13.5_2dc54f5a66f39b94662202d5514157d553e25f7d
| 20260507 07:41:33.475 | INFO | Spawn 24 workers
| 20260507 07:41:33.719 | INFO | Beginning read of next slice
| 20260507 07:41:33.719 | INFO | OOM score went from -1 to 1268
| 20260507 07:41:34.719 | INFO | OOM score went from 1268 to 1270
| 20260507 07:41:35.711 | INFO | Finished read of next slice
| 20260507 07:41:35.711 | WARN | Anomalous profiling event (reported in ms):
| 20260507 07:41:35.711 | WARN |     READ_PROFILES measured slower than specified threshold of 3.40282e+38 standard deviations
| 20260507 07:41:35.711 | WARN |     IDs:       Historic mean +- stdev, [ Current Measurements ]
| 20260507 07:41:35.711 | WARN |     ----------------------------------------------------------
| 20260507 07:41:35.711 | WARN |     Full:      0.00e+00 +- 0.00e+00, [ 1.99e+03 ]
| 20260507 07:41:35.711 | WARN |     TOTAL:     1.95e-03 +- 0.00e+00, [ 1.95e-03 ]
| 20260507 07:41:35.711 | WARN |     READ_DATA: 1.99e+03 +- 0.00e+00, [ 1.99e+03 ]
| 20260507 07:41:35.711 | WARN |     SEND_DATA: 3.56e-02 +- 0.00e+00, [ 3.56e-02 ]
| 20260507 07:41:35.711 | INFO | Beginning read of next slice
| 20260507 07:41:35.719 | INFO | OOM score went from 1270 to 1271
| 20260507 07:41:36.697 | INFO | Finished read of next slice
| 20260507 07:41:36.699 | INFO | Final Performance Profiling Results for READ_PROFILES: (reported in milliseconds)
| 20260507 07:41:36.699 | INFO |     PerfReport: Gathered 2 samples.
| 20260507 07:41:36.699 | INFO |     PerfReport: % Compute,	FullMean/OutlierMean  FullDev/OutlierDev
| 20260507 07:41:36.699 | INFO |     PerfReport: 		Full Execution	-- 1.49e+03 / 1.99e+03,	7.11e+02 / 0.00e+00
| 20260507 07:41:36.699 | INFO |     PerfReport: 0.00%,	     TOTAL -- 1.74e-03 / 1.95e-03,	3.02e-04 / 0.00e+00
| 20260507 07:41:36.699 | INFO |     PerfReport: 100.00%,	 READ_DATA -- 1.49e+03 / 1.99e+03,	7.11e+02 / 0.00e+00
| 20260507 07:41:36.699 | INFO |     PerfReport: 0.00%,	 SEND_DATA -- 4.19e-02 / 3.56e-02,	8.81e-03 / 0.00e+00
| 20260507 07:41:36.719 | INFO | OOM score went from 1271 to 1274
| 20260507 07:41:37.624 | INFO | Snapshot : 737.9% / 39T / 3.9G
| 20260507 07:41:37.719 | INFO | OOM score went from 1274 to 1276
| 20260507 07:41:37.719 | INFO | Sending progress 0.205076
| 20260507 07:41:38.720 | INFO | Sending progress 0.648431
| 20260507 07:41:39.721 | INFO | Sending progress 0.941397
| 20260507 07:41:39.935 | INFO | Closing BAM files
| 20260507 07:41:39.935 | INFO | Writing PBI files
| 20260507 07:41:40.726 | INFO | Sending progress 0.999990
| 20260507 07:41:42.625 | INFO | Snapshot : 508.5% / 16T / 4.3G
| 20260507 07:41:47.623 | INFO | Snapshot : 6.2% / 16T / 4.2G
| 20260507 07:41:52.623 | INFO | Snapshot : 6.0% / 16T / 4.2G
| 20260507 07:41:57.624 | INFO | Snapshot : 3.2% / 16T / 4.1G
| 20260507 07:42:02.622 | INFO | Snapshot : 3.6% / 16T / 4.1G
| 20260507 07:42:03.208 | INFO | Corrected missing adapter (>35% per ZMW) in 22 ZMWs, 1.673% of 1315 total ZMWs with adapters
| 20260507 07:42:03.208 | INFO | Corrected missed adapter (<=35% per ZMW) in 87 ZMWs, 6.61597% of 1315 total ZMWs with adapters
| 20260507 07:42:03.208 | INFO | Corrected adapters in 109 ZMWs, 8.28897% of 1315 total ZMWs with adapters
| 20260507 07:42:03.208 | INFO | Adapter Correction imputed 274 of 9849 total adapters (2.78201%)
| 20260507 07:42:03.208 | INFO | Opening file "metadata/m84031_260506_033729_s1_full_preview_23hr.sts.xml.tmp"
| 20260507 07:42:03.223 | INFO | Renaming file "metadata/m84031_260506_033729_s1_full_preview_23hr.sts.xml.tmp" -> "metadata/m84031_260506_033729_s1_full_preview_23hr.sts.xml"
| 20260507 07:42:03.663 | INFO | BAM files closed and PBIs written
| 20260507 07:42:03.663 | INFO | Closing sts.h5 file
| 20260507 07:42:03.673 | INFO | sts.h5 file closed and written
| 20260507 07:42:03.673 | INFO | Finished ZMW processing 2560
| 20260507 07:42:03.675 | INFO | Finished
| 20260507 07:42:03.675 | INFO | Final Performance Profiling Results for COMPUTE_PROFILES: (reported in milliseconds)
| 20260507 07:42:03.675 | INFO |     PerfReport: Gathered 6377 samples.
| 20260507 07:42:03.675 | INFO |     PerfReport: % Compute,	FullMean/OutlierMean  FullDev/OutlierDev
| 20260507 07:42:03.675 | INFO |     PerfReport: 		Full Execution	-- 2.04e+01 / -nan,	1.40e+02 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 49.69%,	      DATA_WAIT -- 1.01e+01 / 0.00e+00,	9.98e-01 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 0.02%,	      DATA_MOVE -- 6.80e-01 / 0.00e+00,	9.24e-02 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 0.00%,	      DATA_SEND -- 5.12e-02 / 0.00e+00,	1.07e-02 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 4.41%,	   PARSE_BINARY -- 2.24e+00 / 0.00e+00,	2.97e+00 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 1.79%,	PROCESS_PACKETS -- 9.07e-01 / 0.00e+00,	1.90e+00 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 4.01%,	      FIND_HQRF -- 2.03e+00 / 0.00e+00,	2.14e+00 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 4.26%,	   FIND_INSERTS -- 2.16e+00 / 0.00e+00,	3.20e+00 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 0.02%,	     PROD_STATS -- 9.92e-03 / 0.00e+00,	1.36e-02 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 30.68%,	   FIND_SUBREAD -- 1.56e+01 / 0.00e+00,	2.04e+01 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 4.71%,	      ZMW_STATS -- 2.39e+00 / 0.00e+00,	2.83e+00 / 0.00e+00
| 20260507 07:42:03.675 | INFO |     PerfReport: 0.41%,	       FINALIZE -- 2.07e-01 / 0.00e+00,	9.74e-01 / 0.00e+00
| 20260507 07:42:03.675 | INFO | joining thread pool
| 20260507 07:42:03.675 | INFO | joining loggingThread_
| 20260507 07:42:03.788 | INFO | joining done
| 20260507 07:42:03.788 | INFO | ~ConvertBaz2BamDestroyed
| 20260507 07:42:03.788 | INFO | Remap Stats:  shiftedHqRegionStart = 1528 noStartOnLabelTransition = 0 noEndOnLabelTransition = 0
| 20260507 07:42:04.450 | INFO | Run Time : 31s 829ms 
| 20260507 07:42:04.450 | INFO | CPU Time : 1m 3s 
| 20260507 07:42:04.450 | INFO | Peak RSS : 4.550 GB
| 20260507 07:42:04.450 | INFO | Exit code : 0