# This file was produced by bcftools stats (1.20+htslib-1.20) and can be plotted using plot-vcfstats. # The command line was: bcftools stats --samples HG002 --fasta-ref human_GRCh38_no_alt_analysis_set.fasta - # # Definition of sets: # ID [2]id [3]tab-separated file names ID 0 # SN, Summary numbers: # number of records .. number of data rows in the VCF # number of no-ALTs .. reference-only sites, ALT is either "." or identical to REF # number of SNPs .. number of rows with a SNP # number of MNPs .. number of rows with a MNP, such as CC>TT # number of indels .. number of rows with an indel # number of others .. number of rows with other type, for example a symbolic allele or # a complex substitution, such as ACT>TCGA # number of multiallelic sites .. number of rows with multiple alternate alleles # number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs # # Note that rows containing multiple types will be counted multiple times, in each # counter. For example, a row with a SNP and an indel increments both the SNP and # the indel counter. # # SN [2]id [3]key [4]value SN 0 number of samples: 1 SN 0 number of records: 5004875 SN 0 number of no-ALTs: 0 SN 0 number of SNPs: 4086170 SN 0 number of MNPs: 0 SN 0 number of indels: 918703 SN 0 number of others: 2 SN 0 number of multiallelic sites: 0 SN 0 number of multiallelic SNP sites: 0 # TSTV, transitions/transversions: # TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT) TSTV 0 2669532 1416638 1.88 2669532 1416638 1.88 # ICS, Indel context summary: # ICS [2]id [3]repeat-consistent [4]repeat-inconsistent [5]not applicable [6]c/(c+i) ratio ICS 0 223231 22272 673200 0.9093 # ICL, Indel context by length: # ICL [2]id [3]length of repeat element [4]repeat-consistent deletions) [5]repeat-inconsistent deletions [6]consistent insertions [7]inconsistent insertions [8]c/(c+i) ratio ICL 0 2 68318 3426 66291 5846 0.9356 ICL 0 3 14295 1906 8685 2421 0.8415 ICL 0 4 26112 2014 21884 2720 0.9102 ICL 0 5 6585 765 4958 941 0.8712 ICL 0 6 1946 436 1156 515 0.7654 ICL 0 7 716 211 211 255 0.6655 ICL 0 8 810 197 221 208 0.7180 ICL 0 9 481 88 107 92 0.7656 ICL 0 10 376 122 79 109 0.6633 # SiS, Singleton stats: # SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable SiS 0 1 2280497 1531555 748942 607592 164372 14165 429055 # AF, Stats by non-reference allele frequency: # AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable AF 0 0.000000 2280497 1531555 748942 607592 164372 14165 429055 AF 0 0.990000 1805673 1137977 667696 311111 58859 8107 244145 # QUAL, Stats by quality # QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels QUAL 0 19.5 82 36 46 33 QUAL 0 19.6 484 253 231 180 QUAL 0 19.7 761 392 369 231 QUAL 0 19.8 941 484 457 288 QUAL 0 19.9 1027 537 490 281 QUAL 0 20.0 1249 674 575 292 QUAL 0 20.1 1257 637 620 330 QUAL 0 20.2 1356 707 649 319 QUAL 0 20.3 1377 731 646 329 QUAL 0 20.4 1533 776 757 305 QUAL 0 20.5 1515 797 718 307 QUAL 0 20.6 1595 819 776 359 QUAL 0 20.7 1712 881 831 336 QUAL 0 20.8 1634 839 795 363 QUAL 0 20.9 1753 907 846 372 QUAL 0 21.0 1814 896 918 417 QUAL 0 21.1 1788 951 837 405 QUAL 0 21.2 1843 909 934 399 QUAL 0 21.3 1952 1001 951 367 QUAL 0 21.4 1952 1013 939 383 QUAL 0 21.5 1909 998 911 377 QUAL 0 21.6 2060 1016 1044 437 QUAL 0 21.7 2004 1001 1003 399 QUAL 0 21.8 2046 1024 1022 378 QUAL 0 21.9 2107 1036 1071 432 QUAL 0 22.0 2184 1061 1123 459 QUAL 0 22.1 2236 1132 1104 625 QUAL 0 22.2 2187 1108 1079 694 QUAL 0 22.3 2230 1147 1083 789 QUAL 0 22.4 2304 1165 1139 855 QUAL 0 22.5 2204 1074 1130 877 QUAL 0 22.6 2329 1147 1182 954 QUAL 0 22.7 2225 1144 1081 939 QUAL 0 22.8 2296 1148 1148 1056 QUAL 0 22.9 2297 1137 1160 1017 QUAL 0 23.0 2341 1194 1147 1033 QUAL 0 23.1 2341 1135 1206 1093 QUAL 0 23.2 2442 1263 1179 1150 QUAL 0 23.3 2442 1251 1191 1174 QUAL 0 23.4 2560 1285 1275 1188 QUAL 0 23.5 2551 1311 1240 1169 QUAL 0 23.6 2497 1267 1230 1149 QUAL 0 23.7 2594 1277 1317 1199 QUAL 0 23.8 2682 1350 1332 1210 QUAL 0 23.9 2622 1341 1281 1261 QUAL 0 24.0 2744 1423 1321 1306 QUAL 0 24.1 2702 1365 1337 1288 QUAL 0 24.2 2750 1379 1371 1330 QUAL 0 24.3 2737 1352 1385 1303 QUAL 0 24.4 2807 1400 1407 1332 QUAL 0 24.5 2820 1414 1406 1327 QUAL 0 24.6 2797 1420 1377 1365 QUAL 0 24.7 2896 1432 1464 1371 QUAL 0 24.8 3021 1541 1480 1344 QUAL 0 24.9 2909 1496 1413 1465 QUAL 0 25.0 3095 1562 1533 1386 QUAL 0 25.1 2998 1593 1405 1400 QUAL 0 25.2 2998 1583 1415 1451 QUAL 0 25.3 3067 1580 1487 1503 QUAL 0 25.4 3068 1553 1515 1445 QUAL 0 25.5 3145 1599 1546 1509 QUAL 0 25.6 3062 1588 1474 1452 QUAL 0 25.7 3145 1607 1538 1503 QUAL 0 25.8 3279 1701 1578 1536 QUAL 0 25.9 3202 1646 1556 1515 QUAL 0 26.0 3220 1630 1590 1504 QUAL 0 26.1 3228 1662 1566 1588 QUAL 0 26.2 3248 1676 1572 1432 QUAL 0 26.3 3390 1774 1616 1543 QUAL 0 26.4 3318 1709 1609 1562 QUAL 0 26.5 3384 1728 1656 1600 QUAL 0 26.6 3369 1688 1681 1596 QUAL 0 26.7 3382 1771 1611 1535 QUAL 0 26.8 3537 1858 1679 1650 QUAL 0 26.9 3472 1808 1664 1634 QUAL 0 27.0 3463 1842 1621 1626 QUAL 0 27.1 3564 1862 1702 1706 QUAL 0 27.2 3622 1901 1721 1684 QUAL 0 27.3 3456 1783 1673 1688 QUAL 0 27.4 3453 1816 1637 1772 QUAL 0 27.5 3558 1858 1700 1710 QUAL 0 27.6 3601 1908 1693 1703 QUAL 0 27.7 3577 1894 1683 1757 QUAL 0 27.8 3766 1938 1828 1763 QUAL 0 27.9 3692 1886 1806 1757 QUAL 0 28.0 3576 1881 1695 1839 QUAL 0 28.1 3639 1915 1724 1821 QUAL 0 28.2 3695 1963 1732 1826 QUAL 0 28.3 3703 1988 1715 1769 QUAL 0 28.4 3769 1994 1775 1787 QUAL 0 28.5 3684 1939 1745 1786 QUAL 0 28.6 3812 2016 1796 1845 QUAL 0 28.7 3681 1950 1731 1855 QUAL 0 28.8 3935 2050 1885 1860 QUAL 0 28.9 3716 1951 1765 1819 QUAL 0 29.0 3773 1974 1799 1955 QUAL 0 29.1 3786 2076 1710 1945 QUAL 0 29.2 3734 1946 1788 1985 QUAL 0 29.3 3771 1978 1793 1886 QUAL 0 29.4 3853 2114 1739 2044 QUAL 0 29.5 3817 2030 1787 1922 QUAL 0 29.6 3927 2116 1811 1982 QUAL 0 29.7 3986 2135 1851 2003 QUAL 0 29.8 3944 2128 1816 2034 QUAL 0 29.9 4026 2195 1831 1937 QUAL 0 30.0 4135 2313 1822 2093 QUAL 0 30.1 4116 2249 1867 2056 QUAL 0 30.2 4096 2268 1828 2084 QUAL 0 30.3 4125 2171 1954 2004 QUAL 0 30.4 4111 2230 1881 2012 QUAL 0 30.5 4285 2386 1899 2104 QUAL 0 30.6 4272 2363 1909 2013 QUAL 0 30.7 4374 2442 1932 2124 QUAL 0 30.8 4279 2400 1879 2078 QUAL 0 30.9 4551 2564 1987 2127 QUAL 0 31.0 4508 2564 1944 2192 QUAL 0 31.1 4565 2553 2012 2202 QUAL 0 31.2 4612 2549 2063 2176 QUAL 0 31.3 4607 2590 2017 2114 QUAL 0 31.4 4814 2717 2097 2151 QUAL 0 31.5 4749 2657 2092 2139 QUAL 0 31.6 4864 2807 2057 2145 QUAL 0 31.7 4746 2712 2034 2206 QUAL 0 31.8 4960 2837 2123 2289 QUAL 0 31.9 4942 2856 2086 2316 QUAL 0 32.0 5058 2967 2091 2339 QUAL 0 32.1 5115 2943 2172 2246 QUAL 0 32.2 5286 3037 2249 2213 QUAL 0 32.3 5262 3094 2168 2334 QUAL 0 32.4 5601 3254 2347 2374 QUAL 0 32.5 5559 3193 2366 2400 QUAL 0 32.6 5469 3200 2269 2428 QUAL 0 32.7 5622 3329 2293 2462 QUAL 0 32.8 5716 3445 2271 2438 QUAL 0 32.9 5866 3486 2380 2540 QUAL 0 33.0 6051 3627 2424 2509 QUAL 0 33.1 5923 3565 2358 2526 QUAL 0 33.2 6149 3659 2490 2561 QUAL 0 33.3 6177 3767 2410 2559 QUAL 0 33.4 6222 3785 2437 2605 QUAL 0 33.5 6408 3837 2571 2619 QUAL 0 33.6 6361 3859 2502 2588 QUAL 0 33.7 6281 3790 2491 2682 QUAL 0 33.8 6572 3998 2574 2721 QUAL 0 33.9 6323 3868 2455 2752 QUAL 0 34.0 6621 4003 2618 2761 QUAL 0 34.1 6537 4035 2502 2772 QUAL 0 34.2 6603 4094 2509 2799 QUAL 0 34.3 6718 4047 2671 2725 QUAL 0 34.4 6622 4017 2605 2850 QUAL 0 34.5 6604 4042 2562 2970 QUAL 0 34.6 6693 4163 2530 2752 QUAL 0 34.7 6548 4101 2447 2853 QUAL 0 34.8 6574 4088 2486 2892 QUAL 0 34.9 6625 4054 2571 2859 QUAL 0 35.0 6669 4117 2552 2863 QUAL 0 35.1 6620 4094 2526 2842 QUAL 0 35.2 6615 4078 2537 2863 QUAL 0 35.3 6695 4132 2563 2857 QUAL 0 35.4 6621 4084 2537 2923 QUAL 0 35.5 6771 4216 2555 2963 QUAL 0 35.6 6617 4082 2535 2893 QUAL 0 35.7 6649 4130 2519 2967 QUAL 0 35.8 6701 4178 2523 2962 QUAL 0 35.9 6651 4162 2489 2904 QUAL 0 36.0 6788 4254 2534 2932 QUAL 0 36.1 6417 3985 2432 2934 QUAL 0 36.2 6475 4078 2397 2987 QUAL 0 36.3 6531 4089 2442 2987 QUAL 0 36.4 6537 4150 2387 2914 QUAL 0 36.5 6177 3844 2333 2909 QUAL 0 36.6 6550 4174 2376 2935 QUAL 0 36.7 6343 4008 2335 2970 QUAL 0 36.8 6354 3985 2369 3008 QUAL 0 36.9 6420 4011 2409 2955 QUAL 0 37.0 6313 3967 2346 2883 QUAL 0 37.1 6284 3942 2342 2890 QUAL 0 37.2 6091 3812 2279 2856 QUAL 0 37.3 6168 3886 2282 2846 QUAL 0 37.4 6151 3851 2300 2838 QUAL 0 37.5 6266 3951 2315 2832 QUAL 0 37.6 6300 3996 2304 2882 QUAL 0 37.7 6254 3812 2442 2786 QUAL 0 37.8 6184 3874 2310 2743 QUAL 0 37.9 6318 4055 2263 2644 QUAL 0 38.0 6229 3919 2310 2638 QUAL 0 38.1 6429 3984 2445 2665 QUAL 0 38.2 6298 4003 2295 2580 QUAL 0 38.3 6350 4057 2293 2620 QUAL 0 38.4 6460 4072 2388 2624 QUAL 0 38.5 6351 4093 2258 2647 QUAL 0 38.6 6552 4131 2421 2547 QUAL 0 38.7 6447 4086 2361 2473 QUAL 0 38.8 6567 4159 2408 2489 QUAL 0 38.9 6524 4187 2337 2449 QUAL 0 39.0 6616 4210 2406 2446 QUAL 0 39.1 6624 4258 2366 2551 QUAL 0 39.2 6840 4369 2471 2381 QUAL 0 39.3 6851 4461 2390 2356 QUAL 0 39.4 6718 4293 2425 2338 QUAL 0 39.5 7053 4575 2478 2419 QUAL 0 39.6 7050 4543 2507 2330 QUAL 0 39.7 7283 4782 2501 2318 QUAL 0 39.8 7106 4617 2489 2286 QUAL 0 39.9 7392 4837 2555 2237 QUAL 0 40.0 7469 4885 2584 2348 QUAL 0 40.1 7393 4882 2511 2266 QUAL 0 40.2 7687 4984 2703 2315 QUAL 0 40.3 7644 4902 2742 2251 QUAL 0 40.4 7791 5054 2737 2187 QUAL 0 40.5 7836 5175 2661 2191 QUAL 0 40.6 8038 5262 2776 2213 QUAL 0 40.7 8302 5387 2915 2237 QUAL 0 40.8 8468 5511 2957 2220 QUAL 0 40.9 8576 5697 2879 2231 QUAL 0 41.0 8772 5801 2971 2203 QUAL 0 41.1 9001 5920 3081 2027 QUAL 0 41.2 9291 6111 3180 2176 QUAL 0 41.3 9523 6287 3236 2144 QUAL 0 41.4 9743 6453 3290 2100 QUAL 0 41.5 10094 6839 3255 2178 QUAL 0 41.6 10477 6909 3568 2184 QUAL 0 41.7 10356 6822 3534 2214 QUAL 0 41.8 10813 7193 3620 2137 QUAL 0 41.9 11189 7451 3738 2167 QUAL 0 42.0 11481 7682 3799 2135 QUAL 0 42.1 11650 7784 3866 2033 QUAL 0 42.2 12085 8139 3946 2198 QUAL 0 42.3 12496 8323 4173 2105 QUAL 0 42.4 12682 8555 4127 2180 QUAL 0 42.5 13246 8899 4347 2206 QUAL 0 42.6 13496 9047 4449 2185 QUAL 0 42.7 13893 9311 4582 2151 QUAL 0 42.8 14063 9481 4582 2179 QUAL 0 42.9 14627 9809 4818 2179 QUAL 0 43.0 14982 10015 4967 2168 QUAL 0 43.1 15287 10291 4996 2136 QUAL 0 43.2 15943 10658 5285 2127 QUAL 0 43.3 16152 10811 5341 2204 QUAL 0 43.4 16524 11208 5316 2147 QUAL 0 43.5 17036 11427 5609 2134 QUAL 0 43.6 17534 11787 5747 2104 QUAL 0 43.7 17988 12065 5923 2083 QUAL 0 43.8 18092 12242 5850 2099 QUAL 0 43.9 18653 12690 5963 2022 QUAL 0 44.0 19103 12809 6294 2028 QUAL 0 44.1 19448 13266 6182 2053 QUAL 0 44.2 19593 13272 6321 1965 QUAL 0 44.3 20474 13917 6557 2013 QUAL 0 44.4 20690 14151 6539 1953 QUAL 0 44.5 21056 14225 6831 1878 QUAL 0 44.6 21670 14741 6929 2000 QUAL 0 44.7 21709 14736 6973 1921 QUAL 0 44.8 22364 15151 7213 1995 QUAL 0 44.9 22455 15265 7190 1867 QUAL 0 45.0 23025 15524 7501 1918 QUAL 0 45.1 23245 15863 7382 1852 QUAL 0 45.2 23705 16173 7532 1800 QUAL 0 45.3 23888 16281 7607 1858 QUAL 0 45.4 24163 16382 7781 1787 QUAL 0 45.5 24681 16855 7826 1841 QUAL 0 45.6 24721 16779 7942 1778 QUAL 0 45.7 24980 16967 8013 1800 QUAL 0 45.8 25548 17540 8008 1667 QUAL 0 45.9 25356 17264 8092 1764 QUAL 0 46.0 25898 17573 8325 1744 QUAL 0 46.1 25937 17695 8242 1741 QUAL 0 46.2 26372 18070 8302 1755 QUAL 0 46.3 25931 17554 8377 1700 QUAL 0 46.4 25941 17783 8158 1684 QUAL 0 46.5 26216 17749 8467 1714 QUAL 0 46.6 26461 18076 8385 1711 QUAL 0 46.7 26467 18052 8415 1599 QUAL 0 46.8 26429 18093 8336 1647 QUAL 0 46.9 26324 17969 8355 1619 QUAL 0 47.0 26445 18060 8385 1585 QUAL 0 47.1 26571 18268 8303 1626 QUAL 0 47.2 26062 17753 8309 1662 QUAL 0 47.3 26220 17969 8251 1527 QUAL 0 47.4 25826 17712 8114 1603 QUAL 0 47.5 25464 17415 8049 1499 QUAL 0 47.6 25012 17115 7897 1526 QUAL 0 47.7 24917 17016 7901 1597 QUAL 0 47.8 24671 16891 7780 1595 QUAL 0 47.9 24506 16780 7726 1468 QUAL 0 48.0 24128 16454 7674 1514 QUAL 0 48.1 23571 16186 7385 1497 QUAL 0 48.2 23560 16127 7433 1416 QUAL 0 48.3 22503 15434 7069 1467 QUAL 0 48.4 22177 15160 7017 1491 QUAL 0 48.5 21325 14677 6648 1454 QUAL 0 48.6 20769 14292 6477 1429 QUAL 0 48.7 19830 13611 6219 1471 QUAL 0 48.8 18963 12951 6012 1440 QUAL 0 48.9 18079 12276 5803 1479 QUAL 0 49.0 16942 11532 5410 1496 QUAL 0 49.1 16120 10971 5149 1399 QUAL 0 49.2 15042 10175 4867 1496 QUAL 0 49.3 13579 9238 4341 1435 QUAL 0 49.4 12488 8521 3967 1471 QUAL 0 49.5 11104 7540 3564 1459 QUAL 0 49.6 10032 6745 3287 1423 QUAL 0 49.7 8834 5905 2929 1401 QUAL 0 49.8 7632 5187 2445 1420 QUAL 0 49.9 6714 4450 2264 1503 QUAL 0 50.0 5915 4009 1906 1487 QUAL 0 50.1 5251 3525 1726 1502 QUAL 0 50.2 4689 3107 1582 1452 QUAL 0 50.3 4320 2760 1560 1423 QUAL 0 50.4 3822 2496 1326 1398 QUAL 0 50.5 3526 2233 1293 1449 QUAL 0 50.6 3213 2037 1176 1497 QUAL 0 50.7 3052 1987 1065 1423 QUAL 0 50.8 2902 1884 1018 1439 QUAL 0 50.9 2805 1807 998 1481 QUAL 0 51.0 2636 1695 941 1430 QUAL 0 51.1 2596 1651 945 1500 QUAL 0 51.2 2549 1620 929 1519 QUAL 0 51.3 2561 1637 924 1461 QUAL 0 51.4 2471 1586 885 1500 QUAL 0 51.5 2401 1548 853 1478 QUAL 0 51.6 2459 1570 889 1527 QUAL 0 51.7 2469 1620 849 1511 QUAL 0 51.8 2585 1688 897 1514 QUAL 0 51.9 2603 1679 924 1484 QUAL 0 52.0 2561 1671 890 1464 QUAL 0 52.1 2604 1692 912 1511 QUAL 0 52.2 2583 1686 897 1482 QUAL 0 52.3 2700 1771 929 1459 QUAL 0 52.4 2709 1792 917 1531 QUAL 0 52.5 2759 1821 938 1520 QUAL 0 52.6 2759 1789 970 1488 QUAL 0 52.7 2739 1771 968 1456 QUAL 0 52.8 2956 1963 993 1467 QUAL 0 52.9 2943 1947 996 1469 QUAL 0 53.0 2993 1960 1033 1443 QUAL 0 53.1 2965 1959 1006 1435 QUAL 0 53.2 3068 1977 1091 1415 QUAL 0 53.3 3223 2117 1106 1513 QUAL 0 53.4 3126 2032 1094 1402 QUAL 0 53.5 3173 2058 1115 1500 QUAL 0 53.6 3420 2261 1159 1456 QUAL 0 53.7 3641 2337 1304 1504 QUAL 0 53.8 3456 2308 1148 1403 QUAL 0 53.9 3705 2460 1245 1485 QUAL 0 54.0 3586 2363 1223 1473 QUAL 0 54.1 3829 2541 1288 1402 QUAL 0 54.2 3803 2532 1271 1365 QUAL 0 54.3 3882 2569 1313 1368 QUAL 0 54.4 4058 2695 1363 1470 QUAL 0 54.5 4163 2782 1381 1460 QUAL 0 54.6 4191 2751 1440 1419 QUAL 0 54.7 4275 2848 1427 1419 QUAL 0 54.8 4268 2863 1405 1458 QUAL 0 54.9 4675 3087 1588 1337 QUAL 0 55.0 4548 3010 1538 1361 QUAL 0 55.1 4765 3172 1593 1318 QUAL 0 55.2 4922 3324 1598 1318 QUAL 0 55.3 5020 3414 1606 1307 QUAL 0 55.4 5244 3546 1698 1283 QUAL 0 55.5 5085 3438 1647 1249 QUAL 0 55.6 5707 3787 1920 1242 QUAL 0 55.7 5476 3675 1801 1271 QUAL 0 55.8 5841 3843 1998 1271 QUAL 0 55.9 5708 3860 1848 1215 QUAL 0 56.0 6123 4078 2045 1270 QUAL 0 56.1 5896 3934 1962 1229 QUAL 0 56.2 6432 4310 2122 1239 QUAL 0 56.3 5969 4059 1910 1203 QUAL 0 56.4 6738 4574 2164 1202 QUAL 0 56.5 6113 4102 2011 1200 QUAL 0 56.6 6825 4607 2218 1164 QUAL 0 56.7 6825 4626 2199 1214 QUAL 0 56.8 6925 4679 2246 1138 QUAL 0 56.9 6936 4640 2296 1141 QUAL 0 57.0 6812 4623 2189 1117 QUAL 0 57.1 7396 5030 2366 1186 QUAL 0 57.2 7393 4983 2410 1125 QUAL 0 57.3 6938 4723 2215 1100 QUAL 0 57.4 7487 5112 2375 1102 QUAL 0 57.5 7357 4899 2458 1105 QUAL 0 57.6 7285 4965 2320 1104 QUAL 0 57.7 7595 5174 2421 1047 QUAL 0 57.8 7829 5320 2509 1076 QUAL 0 57.9 7276 4894 2382 1067 QUAL 0 58.0 8234 5619 2615 1005 QUAL 0 58.1 7946 5281 2665 1081 QUAL 0 58.2 7543 5135 2408 975 QUAL 0 58.3 8014 5472 2542 1019 QUAL 0 58.4 8307 5591 2716 995 QUAL 0 58.5 8115 5537 2578 957 QUAL 0 58.6 7883 5290 2593 969 QUAL 0 58.7 8468 5782 2686 1019 QUAL 0 58.8 8540 5753 2787 982 QUAL 0 58.9 8044 5449 2595 959 QUAL 0 59.0 8364 5705 2659 962 QUAL 0 59.1 8943 6060 2883 971 QUAL 0 59.2 8877 6065 2812 933 QUAL 0 59.3 8660 5884 2776 930 QUAL 0 59.4 8404 5738 2666 858 QUAL 0 59.5 9204 6261 2943 933 QUAL 0 59.6 9164 6213 2951 904 QUAL 0 59.7 9296 6327 2969 874 QUAL 0 59.8 8738 5890 2848 868 QUAL 0 59.9 8711 5957 2754 873 QUAL 0 60.0 9996 6846 3150 906 QUAL 0 60.1 9397 6457 2940 849 QUAL 0 60.2 9742 6576 3166 881 QUAL 0 60.3 9232 6339 2893 820 QUAL 0 60.4 8945 6158 2787 772 QUAL 0 60.5 9804 6699 3105 818 QUAL 0 60.6 10057 6903 3154 791 QUAL 0 60.7 10176 6913 3263 818 QUAL 0 60.8 10219 6856 3363 805 QUAL 0 60.9 9543 6535 3008 720 QUAL 0 61.0 9533 6482 3051 750 QUAL 0 61.1 9537 6534 3003 759 QUAL 0 61.2 10460 7119 3341 750 QUAL 0 61.3 10223 6972 3251 776 QUAL 0 61.4 9793 6656 3137 746 QUAL 0 61.5 10226 6877 3349 723 QUAL 0 61.6 9636 6580 3056 699 QUAL 0 61.7 9426 6430 2996 662 QUAL 0 61.8 9212 6247 2965 787 QUAL 0 61.9 10686 7310 3376 696 QUAL 0 62.0 10234 7054 3180 714 QUAL 0 62.1 9911 6707 3204 690 QUAL 0 62.2 10237 6981 3256 685 QUAL 0 62.3 9708 6680 3028 638 QUAL 0 62.4 9341 6349 2992 646 QUAL 0 62.5 9333 6378 2955 645 QUAL 0 62.6 8735 6004 2731 646 QUAL 0 62.7 9872 6709 3163 605 QUAL 0 62.8 10683 7348 3335 619 QUAL 0 62.9 10389 7134 3255 616 QUAL 0 63.0 10247 7024 3223 643 QUAL 0 63.1 10049 6892 3157 571 QUAL 0 63.2 10359 6955 3404 577 QUAL 0 63.3 9514 6521 2993 550 QUAL 0 63.4 9304 6343 2961 605 QUAL 0 63.5 9196 6268 2928 547 QUAL 0 63.6 8743 5932 2811 524 QUAL 0 63.7 8780 6023 2757 561 QUAL 0 63.8 9938 6877 3061 513 QUAL 0 63.9 11364 7768 3596 517 QUAL 0 64.0 10900 7423 3477 518 QUAL 0 64.1 10733 7333 3400 540 QUAL 0 64.2 10493 7283 3210 509 QUAL 0 64.3 10215 7004 3211 508 QUAL 0 64.4 9857 6693 3164 529 QUAL 0 64.5 10559 7087 3472 533 QUAL 0 64.6 9467 6500 2967 488 QUAL 0 64.7 9406 6416 2990 552 QUAL 0 64.8 8937 6144 2793 485 QUAL 0 64.9 9062 6307 2755 474 QUAL 0 65.0 8721 5950 2771 479 QUAL 0 65.1 8504 5895 2609 482 QUAL 0 65.2 8501 5759 2742 461 QUAL 0 65.3 11011 7498 3513 463 QUAL 0 65.4 10740 7300 3440 435 QUAL 0 65.5 10601 7269 3332 454 QUAL 0 65.6 10255 6905 3350 453 QUAL 0 65.7 10313 7127 3186 485 QUAL 0 65.8 10046 6961 3085 474 QUAL 0 65.9 9644 6563 3081 420 QUAL 0 66.0 9312 6316 2996 465 QUAL 0 66.1 9205 6384 2821 420 QUAL 0 66.2 9680 6389 3291 462 QUAL 0 66.3 8947 6108 2839 404 QUAL 0 66.4 8538 5736 2802 448 QUAL 0 66.5 8432 5757 2675 419 QUAL 0 66.6 8141 5504 2637 419 QUAL 0 66.7 7996 5454 2542 433 QUAL 0 66.8 7910 5342 2568 425 QUAL 0 66.9 7696 5232 2464 427 QUAL 0 67.0 7430 5057 2373 427 QUAL 0 67.1 7319 4943 2376 453 QUAL 0 67.2 7174 4842 2332 425 QUAL 0 67.3 7008 4775 2233 423 QUAL 0 67.4 6906 4718 2188 432 QUAL 0 67.5 4923 3373 1550 356 QUAL 0 67.6 4351 2926 1425 333 QUAL 0 67.7 4220 2874 1346 372 QUAL 0 67.8 4044 2766 1278 353 QUAL 0 67.9 4007 2743 1264 358 QUAL 0 68.0 3871 2662 1209 366 QUAL 0 68.1 3850 2577 1273 337 QUAL 0 68.2 3664 2529 1135 351 QUAL 0 68.3 3550 2420 1130 347 QUAL 0 68.4 3412 2311 1101 367 QUAL 0 68.5 3516 2379 1137 376 QUAL 0 68.6 3409 2314 1095 381 QUAL 0 68.7 3324 2268 1056 361 QUAL 0 68.8 3303 2274 1029 329 QUAL 0 68.9 3258 2203 1055 375 QUAL 0 69.0 3119 2130 989 331 QUAL 0 69.1 2997 2044 953 365 QUAL 0 69.2 4009 2451 1558 399 QUAL 0 69.3 3146 2103 1043 395 QUAL 0 69.4 2899 1968 931 348 QUAL 0 69.5 2839 1941 898 299 QUAL 0 69.6 2729 1841 888 329 QUAL 0 69.7 2591 1764 827 358 QUAL 0 69.8 2613 1816 797 360 QUAL 0 69.9 2490 1677 813 337 QUAL 0 70.0 2517 1715 802 367 QUAL 0 70.1 2327 1600 727 329 QUAL 0 70.2 2410 1619 791 331 QUAL 0 70.3 2333 1592 741 347 QUAL 0 70.4 2244 1520 724 343 QUAL 0 70.5 2204 1536 668 351 QUAL 0 70.6 2075 1365 710 355 QUAL 0 70.7 2092 1452 640 335 QUAL 0 70.8 2072 1405 667 308 QUAL 0 70.9 1983 1357 626 315 QUAL 0 71.0 1962 1333 629 315 QUAL 0 71.1 1893 1313 580 341 QUAL 0 71.2 1898 1324 574 317 QUAL 0 71.3 1817 1230 587 300 QUAL 0 71.4 1755 1163 592 293 QUAL 0 71.5 1763 1168 595 301 QUAL 0 71.6 1687 1153 534 325 QUAL 0 71.7 1696 1141 555 302 QUAL 0 71.8 1613 1096 517 315 QUAL 0 71.9 1573 1054 519 296 QUAL 0 72.0 1502 1040 462 292 QUAL 0 72.1 1554 1028 526 305 QUAL 0 72.2 1397 949 448 303 QUAL 0 72.3 84 42 42 306 QUAL 0 72.4 72 31 41 271 QUAL 0 72.5 80 44 36 269 QUAL 0 72.6 69 47 22 313 QUAL 0 72.7 86 54 32 289 QUAL 0 72.8 94 58 36 270 QUAL 0 72.9 80 42 38 283 QUAL 0 73.0 73 38 35 261 QUAL 0 73.1 86 49 37 285 QUAL 0 73.2 73 43 30 293 QUAL 0 73.3 66 38 28 272 QUAL 0 73.4 74 46 28 303 QUAL 0 73.5 48 30 18 310 QUAL 0 73.6 69 49 20 271 QUAL 0 73.7 66 36 30 277 QUAL 0 73.8 57 26 31 280 QUAL 0 73.9 64 37 27 285 QUAL 0 74.0 59 32 27 271 QUAL 0 74.1 63 43 20 270 QUAL 0 74.2 61 37 24 262 QUAL 0 74.3 53 35 18 243 QUAL 0 74.4 64 36 28 277 QUAL 0 74.5 60 31 29 264 QUAL 0 74.6 42 26 16 265 QUAL 0 74.7 53 28 25 241 QUAL 0 74.8 39 21 18 274 QUAL 0 74.9 47 25 22 226 QUAL 0 75.0 58 28 30 271 QUAL 0 75.1 57 39 18 263 QUAL 0 75.2 30 15 15 263 QUAL 0 75.3 59 29 30 256 QUAL 0 75.4 52 31 21 251 QUAL 0 75.5 42 30 12 241 QUAL 0 75.6 50 28 22 236 QUAL 0 75.7 40 21 19 260 QUAL 0 75.8 42 24 18 248 QUAL 0 75.9 32 21 11 268 QUAL 0 76.0 37 20 17 231 QUAL 0 76.1 38 21 17 245 QUAL 0 76.2 36 18 18 231 QUAL 0 76.3 32 18 14 234 QUAL 0 76.4 37 17 20 207 QUAL 0 76.5 41 21 20 195 QUAL 0 76.6 37 23 14 254 QUAL 0 76.7 37 21 16 227 QUAL 0 76.8 37 20 17 205 QUAL 0 76.9 28 12 16 196 QUAL 0 77.0 31 14 17 235 QUAL 0 77.1 33 22 11 227 QUAL 0 77.2 34 17 17 188 QUAL 0 77.3 36 15 21 213 QUAL 0 77.4 21 9 12 199 QUAL 0 77.5 23 9 14 213 QUAL 0 77.6 22 11 11 220 QUAL 0 77.7 30 16 14 216 QUAL 0 77.8 15 8 7 179 QUAL 0 77.9 43 21 22 222 QUAL 0 78.0 36 24 12 177 QUAL 0 78.1 29 17 12 207 QUAL 0 78.2 29 18 11 208 QUAL 0 78.3 19 10 9 163 QUAL 0 78.4 26 16 10 161 QUAL 0 78.5 24 13 11 196 QUAL 0 78.6 21 8 13 182 QUAL 0 78.7 25 14 11 217 QUAL 0 78.8 26 15 11 183 QUAL 0 78.9 24 13 11 175 QUAL 0 79.0 27 14 13 153 QUAL 0 79.1 20 11 9 189 QUAL 0 79.2 19 8 11 177 QUAL 0 79.3 30 15 15 185 QUAL 0 79.4 27 15 12 170 QUAL 0 79.5 20 10 10 162 QUAL 0 79.6 26 14 12 167 QUAL 0 79.7 16 6 10 143 QUAL 0 79.8 19 11 8 176 QUAL 0 79.9 27 12 15 150 QUAL 0 80.0 22 14 8 147 QUAL 0 80.1 17 10 7 160 QUAL 0 80.2 23 13 10 175 QUAL 0 80.3 22 13 9 173 QUAL 0 80.4 27 14 13 158 QUAL 0 80.5 14 7 7 152 QUAL 0 80.6 25 11 14 148 QUAL 0 80.7 12 6 6 173 QUAL 0 80.8 20 8 12 158 QUAL 0 80.9 25 15 10 145 QUAL 0 81.0 23 13 10 163 QUAL 0 81.1 18 11 7 157 QUAL 0 81.2 15 7 8 128 QUAL 0 81.3 14 5 9 151 QUAL 0 81.4 14 7 7 171 QUAL 0 81.5 16 10 6 141 QUAL 0 81.6 30 19 11 193 QUAL 0 81.7 22 9 13 182 QUAL 0 81.8 21 12 9 150 QUAL 0 81.9 18 9 9 157 QUAL 0 82.0 12 3 9 154 QUAL 0 82.1 25 18 7 167 QUAL 0 82.2 24 11 13 165 QUAL 0 82.3 16 10 6 150 QUAL 0 82.4 15 4 11 146 QUAL 0 82.5 19 11 8 140 QUAL 0 82.6 10 4 6 134 QUAL 0 82.7 13 5 8 148 QUAL 0 82.8 16 8 8 178 QUAL 0 82.9 17 8 9 152 QUAL 0 83.0 21 9 12 141 QUAL 0 83.1 17 13 4 168 QUAL 0 83.2 14 6 8 124 QUAL 0 83.3 16 8 8 158 QUAL 0 83.4 11 5 6 156 QUAL 0 83.5 22 7 15 215 QUAL 0 83.6 13 6 7 132 QUAL 0 83.7 13 8 5 167 QUAL 0 83.8 15 7 8 122 QUAL 0 83.9 15 7 8 156 QUAL 0 84.0 10 3 7 170 QUAL 0 84.1 14 6 8 180 QUAL 0 84.2 12 5 7 134 QUAL 0 84.3 20 11 9 127 QUAL 0 84.4 26 10 16 208 QUAL 0 84.5 16 8 8 151 QUAL 0 84.6 15 7 8 145 QUAL 0 84.7 17 7 10 161 QUAL 0 84.8 6 3 3 184 QUAL 0 84.9 23 13 10 184 QUAL 0 85.0 13 7 6 129 QUAL 0 85.1 21 13 8 152 QUAL 0 85.2 17 9 8 199 QUAL 0 85.3 10 4 6 162 QUAL 0 85.4 11 5 6 152 QUAL 0 85.5 22 11 11 160 QUAL 0 85.6 17 7 10 167 QUAL 0 85.7 13 11 2 161 QUAL 0 85.8 13 7 6 167 QUAL 0 85.9 15 6 9 164 QUAL 0 86.0 14 7 7 158 QUAL 0 86.1 13 8 5 167 QUAL 0 86.2 13 6 7 187 QUAL 0 86.3 13 4 9 165 QUAL 0 86.4 13 7 6 161 QUAL 0 86.5 23 11 12 199 QUAL 0 86.6 21 12 9 146 QUAL 0 86.7 11 6 5 168 QUAL 0 86.8 13 10 3 164 QUAL 0 86.9 10 5 5 166 QUAL 0 87.0 13 5 8 166 QUAL 0 87.1 13 6 7 184 QUAL 0 87.2 6 4 2 156 QUAL 0 87.3 16 9 7 183 QUAL 0 87.4 7 5 2 144 QUAL 0 87.5 12 8 4 201 QUAL 0 87.6 17 9 8 172 QUAL 0 87.7 11 6 5 178 QUAL 0 87.8 15 6 9 177 QUAL 0 87.9 19 6 13 164 QUAL 0 88.0 18 11 7 149 QUAL 0 88.1 16 8 8 152 QUAL 0 88.2 14 9 5 186 QUAL 0 88.3 15 5 10 151 QUAL 0 88.4 9 5 4 180 QUAL 0 88.5 18 4 14 164 QUAL 0 88.6 13 7 6 190 QUAL 0 88.7 14 8 6 182 QUAL 0 88.8 15 11 4 225 QUAL 0 88.9 17 10 7 170 QUAL 0 89.0 8 5 3 205 QUAL 0 89.1 10 5 5 173 QUAL 0 89.2 10 7 3 185 QUAL 0 89.3 8 5 3 177 QUAL 0 89.4 13 8 5 193 QUAL 0 89.5 11 5 6 186 QUAL 0 89.6 14 8 6 185 QUAL 0 89.7 10 4 6 196 QUAL 0 89.8 16 7 9 150 QUAL 0 89.9 11 3 8 157 QUAL 0 90.0 15 7 8 195 QUAL 0 90.1 8 4 4 160 QUAL 0 90.2 4 2 2 173 QUAL 0 90.3 13 8 5 203 QUAL 0 90.4 15 7 8 190 QUAL 0 90.5 10 4 6 170 QUAL 0 90.6 18 7 11 153 QUAL 0 90.7 10 4 6 188 QUAL 0 90.8 8 3 5 187 QUAL 0 90.9 19 12 7 218 QUAL 0 91.0 13 6 7 178 QUAL 0 91.1 9 5 4 176 QUAL 0 91.2 12 5 7 163 QUAL 0 91.3 12 6 6 153 QUAL 0 91.4 11 2 9 192 QUAL 0 91.5 16 10 6 173 QUAL 0 91.6 9 4 5 177 QUAL 0 91.7 8 3 5 160 QUAL 0 91.8 8 4 4 170 QUAL 0 91.9 16 6 10 180 QUAL 0 92.0 12 5 7 182 QUAL 0 92.1 9 4 5 179 QUAL 0 92.2 17 6 11 164 QUAL 0 92.3 11 6 5 196 QUAL 0 92.4 17 9 8 202 QUAL 0 92.5 10 6 4 194 QUAL 0 92.6 13 6 7 203 QUAL 0 92.7 12 7 5 210 QUAL 0 92.8 11 5 6 180 QUAL 0 92.9 17 9 8 149 QUAL 0 93.0 8 4 4 216 QUAL 0 93.1 11 5 6 203 QUAL 0 93.2 5 3 2 191 QUAL 0 93.3 19 8 11 195 QUAL 0 93.4 5 1 4 147 QUAL 0 93.5 9 3 6 205 QUAL 0 93.6 9 5 4 139 QUAL 0 93.7 10 2 8 194 QUAL 0 93.8 9 2 7 207 QUAL 0 93.9 9 2 7 192 QUAL 0 94.0 10 6 4 140 QUAL 0 94.1 6 2 4 171 QUAL 0 94.2 7 3 4 218 QUAL 0 94.3 18 10 8 196 QUAL 0 94.4 11 5 6 215 QUAL 0 94.5 7 2 5 202 QUAL 0 94.6 14 7 7 227 QUAL 0 94.7 17 4 13 229 QUAL 0 94.8 4 1 3 220 QUAL 0 94.9 9 6 3 230 QUAL 0 95.0 12 7 5 236 QUAL 0 95.1 8 5 3 182 QUAL 0 95.2 10 5 5 195 QUAL 0 95.3 7 2 5 199 QUAL 0 95.4 11 5 6 223 QUAL 0 95.5 18 10 8 189 QUAL 0 95.6 6 2 4 255 QUAL 0 95.7 3 2 1 172 QUAL 0 95.8 17 6 11 200 QUAL 0 95.9 9 5 4 212 QUAL 0 96.0 15 9 6 223 QUAL 0 96.1 20 8 12 188 QUAL 0 96.2 8 3 5 206 QUAL 0 96.3 9 3 6 207 QUAL 0 96.4 5 5 0 194 QUAL 0 96.5 5 1 4 226 QUAL 0 96.6 15 6 9 232 QUAL 0 96.7 13 9 4 213 QUAL 0 96.8 16 7 9 225 QUAL 0 96.9 13 4 9 207 QUAL 0 97.0 9 5 4 171 QUAL 0 97.1 11 7 4 201 QUAL 0 97.2 14 5 9 214 QUAL 0 97.3 14 7 7 246 QUAL 0 97.4 14 6 8 246 QUAL 0 97.5 7 3 4 220 QUAL 0 97.6 15 11 4 232 QUAL 0 97.7 11 3 8 199 QUAL 0 97.8 17 6 11 233 QUAL 0 97.9 11 7 4 206 QUAL 0 98.0 14 3 11 244 QUAL 0 98.1 11 2 9 198 QUAL 0 98.2 9 6 3 237 QUAL 0 98.3 9 6 3 224 QUAL 0 98.4 13 7 6 226 QUAL 0 98.5 5 3 2 217 QUAL 0 98.6 9 6 3 216 QUAL 0 98.7 17 5 12 233 QUAL 0 98.8 13 6 7 209 QUAL 0 98.9 11 3 8 184 QUAL 0 99.0 43569 17553 26016 108123 # IDD, InDel distribution: # IDD [2]id [3]length (deletions negative) [4]number of sites [5]number of genotypes [6]mean VAF IDD 0 -60 331 331 0.87 IDD 0 -59 15 15 0.73 IDD 0 -58 20 20 0.81 IDD 0 -57 22 22 0.62 IDD 0 -56 50 50 0.65 IDD 0 -55 35 35 0.68 IDD 0 -54 59 59 0.60 IDD 0 -53 45 45 0.62 IDD 0 -52 81 81 0.65 IDD 0 -51 47 47 0.65 IDD 0 -50 115 115 0.62 IDD 0 -49 98 98 0.61 IDD 0 -48 159 159 0.60 IDD 0 -47 72 72 0.64 IDD 0 -46 117 117 0.62 IDD 0 -45 89 89 0.61 IDD 0 -44 149 149 0.62 IDD 0 -43 82 82 0.60 IDD 0 -42 184 184 0.62 IDD 0 -41 118 118 0.64 IDD 0 -40 304 304 0.61 IDD 0 -39 134 134 0.62 IDD 0 -38 259 259 0.60 IDD 0 -37 152 152 0.64 IDD 0 -36 378 378 0.60 IDD 0 -35 182 182 0.58 IDD 0 -34 309 309 0.60 IDD 0 -33 188 188 0.59 IDD 0 -32 502 502 0.57 IDD 0 -31 231 231 0.62 IDD 0 -30 627 627 0.57 IDD 0 -29 284 284 0.60 IDD 0 -28 765 765 0.58 IDD 0 -27 352 352 0.58 IDD 0 -26 680 680 0.57 IDD 0 -25 495 495 0.59 IDD 0 -24 1264 1264 0.57 IDD 0 -23 424 424 0.59 IDD 0 -22 1029 1029 0.55 IDD 0 -21 568 568 0.59 IDD 0 -20 2149 2149 0.55 IDD 0 -19 705 705 0.56 IDD 0 -18 1837 1837 0.55 IDD 0 -17 894 894 0.56 IDD 0 -16 3381 3381 0.54 IDD 0 -15 1849 1849 0.56 IDD 0 -14 3056 3056 0.53 IDD 0 -13 1699 1699 0.54 IDD 0 -12 7080 7080 0.53 IDD 0 -11 2117 2117 0.54 IDD 0 -10 6602 6602 0.52 IDD 0 -9 3539 3539 0.54 IDD 0 -8 12119 12119 0.54 IDD 0 -7 4449 4449 0.54 IDD 0 -6 14249 14249 0.54 IDD 0 -5 12581 12581 0.58 IDD 0 -4 45982 45982 0.58 IDD 0 -3 29889 29889 0.56 IDD 0 -2 80776 80776 0.56 IDD 0 -1 216839 216839 0.61 IDD 0 1 215566 4301736 0.71 IDD 0 2 79790 79790 0.54 IDD 0 3 27781 27781 0.56 IDD 0 4 44202 44202 0.57 IDD 0 5 11458 11458 0.58 IDD 0 6 13720 13720 0.49 IDD 0 7 3836 3836 0.51 IDD 0 8 12082 12082 0.49 IDD 0 9 3088 3088 0.53 IDD 0 10 6134 6134 0.46 IDD 0 11 1784 1784 0.52 IDD 0 12 6713 6713 0.47 IDD 0 13 1352 1352 0.52 IDD 0 14 2720 2720 0.45 IDD 0 15 1664 1664 0.52 IDD 0 16 3253 3253 0.47 IDD 0 17 761 761 0.56 IDD 0 18 1733 1733 0.44 IDD 0 19 594 594 0.58 IDD 0 20 2142 2142 0.45 IDD 0 21 612 612 0.56 IDD 0 22 878 878 0.45 IDD 0 23 406 406 0.57 IDD 0 24 1352 1352 0.46 IDD 0 25 483 483 0.53 IDD 0 26 671 671 0.46 IDD 0 27 348 348 0.57 IDD 0 28 772 772 0.45 IDD 0 29 253 253 0.57 IDD 0 30 597 597 0.47 IDD 0 31 227 227 0.56 IDD 0 32 488 488 0.46 IDD 0 33 180 180 0.54 IDD 0 34 301 301 0.47 IDD 0 35 198 198 0.52 IDD 0 36 366 366 0.46 IDD 0 37 148 148 0.59 IDD 0 38 233 233 0.48 IDD 0 39 133 133 0.55 IDD 0 40 303 303 0.49 IDD 0 41 123 123 0.57 IDD 0 42 176 176 0.54 IDD 0 43 90 90 0.56 IDD 0 44 168 168 0.50 IDD 0 45 101 101 0.53 IDD 0 46 145 145 0.50 IDD 0 47 85 85 0.53 IDD 0 48 190 190 0.52 IDD 0 49 140 140 0.54 IDD 0 50 150 150 0.50 IDD 0 51 80 81 0.53 IDD 0 52 130 130 0.52 IDD 0 53 64 64 0.55 IDD 0 54 106 106 0.52 IDD 0 55 61 61 0.51 IDD 0 56 106 106 0.49 IDD 0 57 70 70 0.51 IDD 0 58 72 72 0.54 IDD 0 59 63 63 0.57 IDD 0 60 4454 4455 0.48 # ST, Substitution types: # ST [2]id [3]type [4]count ST 0 A>C 177328 ST 0 A>G 651665 ST 0 A>T 161035 ST 0 C>A 180122 ST 0 C>G 186895 ST 0 C>T 684233 ST 0 G>A 680370 ST 0 G>C 184160 ST 0 G>T 184993 ST 0 T>A 160362 ST 0 T>C 653264 ST 0 T>G 181743 # DP, Depth distribution # DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites (%) DP 0 2 341 0.006813 0 0.000000 DP 0 3 555 0.011089 0 0.000000 DP 0 4 820 0.016384 0 0.000000 DP 0 5 1859 0.037144 0 0.000000 DP 0 6 3236 0.064657 0 0.000000 DP 0 7 3928 0.078483 0 0.000000 DP 0 8 4118 0.082280 0 0.000000 DP 0 9 4667 0.093249 0 0.000000 DP 0 10 5232 0.104538 0 0.000000 DP 0 11 5271 0.105317 0 0.000000 DP 0 12 5703 0.113949 0 0.000000 DP 0 13 5526 0.110412 0 0.000000 DP 0 14 6242 0.124718 0 0.000000 DP 0 15 6792 0.135708 0 0.000000 DP 0 16 7711 0.154070 0 0.000000 DP 0 17 8914 0.178106 0 0.000000 DP 0 18 10268 0.205160 0 0.000000 DP 0 19 11576 0.231294 0 0.000000 DP 0 20 13147 0.262684 0 0.000000 DP 0 21 15031 0.300327 0 0.000000 DP 0 22 16106 0.321806 0 0.000000 DP 0 23 18022 0.360089 0 0.000000 DP 0 24 19853 0.396673 0 0.000000 DP 0 25 21202 0.423627 0 0.000000 DP 0 26 24149 0.482510 0 0.000000 DP 0 27 26647 0.532421 0 0.000000 DP 0 28 29784 0.595100 0 0.000000 DP 0 29 33402 0.667389 0 0.000000 DP 0 30 38163 0.762517 0 0.000000 DP 0 31 43176 0.862679 0 0.000000 DP 0 32 49956 0.998147 0 0.000000 DP 0 33 57813 1.155134 0 0.000000 DP 0 34 66400 1.326706 0 0.000000 DP 0 35 76471 1.527930 0 0.000000 DP 0 36 88170 1.761682 0 0.000000 DP 0 37 100093 1.999910 0 0.000000 DP 0 38 113062 2.259037 0 0.000000 DP 0 39 125995 2.517445 0 0.000000 DP 0 40 139035 2.777991 0 0.000000 DP 0 41 152179 3.040615 0 0.000000 DP 0 42 164257 3.281940 0 0.000000 DP 0 43 177156 3.539669 0 0.000000 DP 0 44 187597 3.748285 0 0.000000 DP 0 45 196735 3.930867 0 0.000000 DP 0 46 202944 4.054926 0 0.000000 DP 0 47 205972 4.115427 0 0.000000 DP 0 48 207127 4.138505 0 0.000000 DP 0 49 206204 4.120063 0 0.000000 DP 0 50 202267 4.041400 0 0.000000 DP 0 51 195455 3.905292 0 0.000000 DP 0 52 187176 3.739874 0 0.000000 DP 0 53 176822 3.532995 0 0.000000 DP 0 54 163265 3.262119 0 0.000000 DP 0 55 150738 3.011823 0 0.000000 DP 0 56 135319 2.703744 0 0.000000 DP 0 57 121111 2.419861 0 0.000000 DP 0 58 106064 2.119214 0 0.000000 DP 0 59 92966 1.857509 0 0.000000 DP 0 60 80428 1.606993 0 0.000000 DP 0 61 68522 1.369105 0 0.000000 DP 0 62 57019 1.139269 0 0.000000 DP 0 63 46921 0.937506 0 0.000000 DP 0 64 38526 0.769769 0 0.000000 DP 0 65 30981 0.619016 0 0.000000 DP 0 66 25680 0.513100 0 0.000000 DP 0 67 20201 0.403626 0 0.000000 DP 0 68 15716 0.314014 0 0.000000 DP 0 69 12210 0.243962 0 0.000000 DP 0 70 9477 0.189355 0 0.000000 DP 0 71 7454 0.148935 0 0.000000 DP 0 72 5856 0.117006 0 0.000000 DP 0 73 4603 0.091970 0 0.000000 DP 0 74 3723 0.074387 0 0.000000 DP 0 75 3184 0.063618 0 0.000000 DP 0 76 2727 0.054487 0 0.000000 DP 0 77 2338 0.046714 0 0.000000 DP 0 78 2136 0.042678 0 0.000000 DP 0 79 1805 0.036065 0 0.000000 DP 0 80 1655 0.033068 0 0.000000 DP 0 81 1447 0.028912 0 0.000000 DP 0 82 1298 0.025935 0 0.000000 DP 0 83 1362 0.027213 0 0.000000 DP 0 84 1366 0.027293 0 0.000000 DP 0 85 1210 0.024176 0 0.000000 DP 0 86 1200 0.023977 0 0.000000 DP 0 87 1322 0.026414 0 0.000000 DP 0 88 1282 0.025615 0 0.000000 DP 0 89 1179 0.023557 0 0.000000 DP 0 90 1242 0.024816 0 0.000000 DP 0 91 1035 0.020680 0 0.000000 DP 0 92 1189 0.023757 0 0.000000 DP 0 93 1319 0.026354 0 0.000000 DP 0 94 1192 0.023817 0 0.000000 DP 0 95 1062 0.021219 0 0.000000 DP 0 96 1170 0.023377 0 0.000000 DP 0 97 1053 0.021039 0 0.000000 DP 0 98 1001 0.020000 0 0.000000 DP 0 99 1045 0.020880 0 0.000000 DP 0 100 1115 0.022278 0 0.000000 DP 0 101 1025 0.020480 0 0.000000 DP 0 102 1068 0.021339 0 0.000000 DP 0 103 1081 0.021599 0 0.000000 DP 0 104 804 0.016064 0 0.000000 DP 0 105 791 0.015805 0 0.000000 DP 0 106 830 0.016584 0 0.000000 DP 0 107 810 0.016184 0 0.000000 DP 0 108 844 0.016864 0 0.000000 DP 0 109 678 0.013547 0 0.000000 DP 0 110 760 0.015185 0 0.000000 DP 0 111 642 0.012827 0 0.000000 DP 0 112 627 0.012528 0 0.000000 DP 0 113 671 0.013407 0 0.000000 DP 0 114 718 0.014346 0 0.000000 DP 0 115 722 0.014426 0 0.000000 DP 0 116 661 0.013207 0 0.000000 DP 0 117 729 0.014566 0 0.000000 DP 0 118 920 0.018382 0 0.000000 DP 0 119 919 0.018362 0 0.000000 DP 0 120 765 0.015285 0 0.000000 DP 0 121 849 0.016963 0 0.000000 DP 0 122 675 0.013487 0 0.000000 DP 0 123 707 0.014126 0 0.000000 DP 0 124 784 0.015665 0 0.000000 DP 0 125 988 0.019741 0 0.000000 DP 0 126 689 0.013767 0 0.000000 DP 0 127 765 0.015285 0 0.000000 DP 0 128 758 0.015145 0 0.000000 DP 0 129 662 0.013227 0 0.000000 DP 0 130 572 0.011429 0 0.000000 DP 0 131 686 0.013707 0 0.000000 DP 0 132 707 0.014126 0 0.000000 DP 0 133 767 0.015325 0 0.000000 DP 0 134 593 0.011848 0 0.000000 DP 0 135 498 0.009950 0 0.000000 DP 0 136 530 0.010590 0 0.000000 DP 0 137 528 0.010550 0 0.000000 DP 0 138 750 0.014985 0 0.000000 DP 0 139 663 0.013247 0 0.000000 DP 0 140 605 0.012088 0 0.000000 DP 0 141 688 0.013747 0 0.000000 DP 0 142 690 0.013787 0 0.000000 DP 0 143 489 0.009770 0 0.000000 DP 0 144 479 0.009571 0 0.000000 DP 0 145 440 0.008791 0 0.000000 DP 0 146 413 0.008252 0 0.000000 DP 0 147 444 0.008871 0 0.000000 DP 0 148 478 0.009551 0 0.000000 DP 0 149 518 0.010350 0 0.000000 DP 0 150 450 0.008991 0 0.000000 DP 0 151 454 0.009071 0 0.000000 DP 0 152 527 0.010530 0 0.000000 DP 0 153 489 0.009770 0 0.000000 DP 0 154 549 0.010969 0 0.000000 DP 0 155 522 0.010430 0 0.000000 DP 0 156 494 0.009870 0 0.000000 DP 0 157 494 0.009870 0 0.000000 DP 0 158 555 0.011089 0 0.000000 DP 0 159 398 0.007952 0 0.000000 DP 0 160 428 0.008552 0 0.000000 DP 0 161 427 0.008532 0 0.000000 DP 0 162 380 0.007593 0 0.000000 DP 0 163 397 0.007932 0 0.000000 DP 0 164 441 0.008811 0 0.000000 DP 0 165 533 0.010650 0 0.000000 DP 0 166 615 0.012288 0 0.000000 DP 0 167 519 0.010370 0 0.000000 DP 0 168 462 0.009231 0 0.000000 DP 0 169 548 0.010949 0 0.000000 DP 0 170 464 0.009271 0 0.000000 DP 0 171 377 0.007533 0 0.000000 DP 0 172 396 0.007912 0 0.000000 DP 0 173 404 0.008072 0 0.000000 DP 0 174 507 0.010130 0 0.000000 DP 0 175 537 0.010730 0 0.000000 DP 0 176 548 0.010949 0 0.000000 DP 0 177 485 0.009691 0 0.000000 DP 0 178 400 0.007992 0 0.000000 DP 0 179 510 0.010190 0 0.000000 DP 0 180 400 0.007992 0 0.000000 DP 0 181 409 0.008172 0 0.000000 DP 0 182 357 0.007133 0 0.000000 DP 0 183 440 0.008791 0 0.000000 DP 0 184 420 0.008392 0 0.000000 DP 0 185 519 0.010370 0 0.000000 DP 0 186 412 0.008232 0 0.000000 DP 0 187 353 0.007053 0 0.000000 DP 0 188 518 0.010350 0 0.000000 DP 0 189 386 0.007712 0 0.000000 DP 0 190 281 0.005615 0 0.000000 DP 0 191 277 0.005535 0 0.000000 DP 0 192 307 0.006134 0 0.000000 DP 0 193 312 0.006234 0 0.000000 DP 0 194 313 0.006254 0 0.000000 DP 0 195 258 0.005155 0 0.000000 DP 0 196 242 0.004835 0 0.000000 DP 0 197 256 0.005115 0 0.000000 DP 0 198 242 0.004835 0 0.000000 DP 0 199 314 0.006274 0 0.000000 DP 0 200 316 0.006314 0 0.000000 DP 0 201 359 0.007173 0 0.000000 DP 0 202 398 0.007952 0 0.000000 DP 0 203 335 0.006693 0 0.000000 DP 0 204 297 0.005934 0 0.000000 DP 0 205 374 0.007473 0 0.000000 DP 0 206 343 0.006853 0 0.000000 DP 0 207 322 0.006434 0 0.000000 DP 0 208 329 0.006574 0 0.000000 DP 0 209 353 0.007053 0 0.000000 DP 0 210 242 0.004835 0 0.000000 DP 0 211 275 0.005495 0 0.000000 DP 0 212 290 0.005794 0 0.000000 DP 0 213 326 0.006514 0 0.000000 DP 0 214 268 0.005355 0 0.000000 DP 0 215 202 0.004036 0 0.000000 DP 0 216 199 0.003976 0 0.000000 DP 0 217 163 0.003257 0 0.000000 DP 0 218 191 0.003816 0 0.000000 DP 0 219 160 0.003197 0 0.000000 DP 0 220 160 0.003197 0 0.000000 DP 0 221 189 0.003776 0 0.000000 DP 0 222 218 0.004356 0 0.000000 DP 0 223 202 0.004036 0 0.000000 DP 0 224 262 0.005235 0 0.000000 DP 0 225 303 0.006054 0 0.000000 DP 0 226 148 0.002957 0 0.000000 DP 0 227 182 0.003636 0 0.000000 DP 0 228 177 0.003537 0 0.000000 DP 0 229 182 0.003636 0 0.000000 DP 0 230 201 0.004016 0 0.000000 DP 0 231 232 0.004635 0 0.000000 DP 0 232 191 0.003816 0 0.000000 DP 0 233 166 0.003317 0 0.000000 DP 0 234 143 0.002857 0 0.000000 DP 0 235 127 0.002538 0 0.000000 DP 0 236 147 0.002937 0 0.000000 DP 0 237 154 0.003077 0 0.000000 DP 0 238 137 0.002737 0 0.000000 DP 0 239 133 0.002657 0 0.000000 DP 0 240 145 0.002897 0 0.000000 DP 0 241 137 0.002737 0 0.000000 DP 0 242 179 0.003577 0 0.000000 DP 0 243 134 0.002677 0 0.000000 DP 0 244 121 0.002418 0 0.000000 DP 0 245 140 0.002797 0 0.000000 DP 0 246 133 0.002657 0 0.000000 DP 0 247 135 0.002697 0 0.000000 DP 0 248 118 0.002358 0 0.000000 DP 0 249 140 0.002797 0 0.000000 DP 0 250 152 0.003037 0 0.000000 DP 0 251 157 0.003137 0 0.000000 DP 0 252 131 0.002617 0 0.000000 DP 0 253 123 0.002458 0 0.000000 DP 0 254 155 0.003097 0 0.000000 DP 0 255 141 0.002817 0 0.000000 DP 0 256 142 0.002837 0 0.000000 DP 0 257 143 0.002857 0 0.000000 DP 0 258 145 0.002897 0 0.000000 DP 0 259 155 0.003097 0 0.000000 DP 0 260 135 0.002697 0 0.000000 DP 0 261 120 0.002398 0 0.000000 DP 0 262 103 0.002058 0 0.000000 DP 0 263 159 0.003177 0 0.000000 DP 0 264 160 0.003197 0 0.000000 DP 0 265 142 0.002837 0 0.000000 DP 0 266 153 0.003057 0 0.000000 DP 0 267 100 0.001998 0 0.000000 DP 0 268 120 0.002398 0 0.000000 DP 0 269 147 0.002937 0 0.000000 DP 0 270 107 0.002138 0 0.000000 DP 0 271 102 0.002038 0 0.000000 DP 0 272 89 0.001778 0 0.000000 DP 0 273 120 0.002398 0 0.000000 DP 0 274 103 0.002058 0 0.000000 DP 0 275 106 0.002118 0 0.000000 DP 0 276 113 0.002258 0 0.000000 DP 0 277 95 0.001898 0 0.000000 DP 0 278 97 0.001938 0 0.000000 DP 0 279 145 0.002897 0 0.000000 DP 0 280 136 0.002717 0 0.000000 DP 0 281 107 0.002138 0 0.000000 DP 0 282 97 0.001938 0 0.000000 DP 0 283 74 0.001479 0 0.000000 DP 0 284 81 0.001618 0 0.000000 DP 0 285 93 0.001858 0 0.000000 DP 0 286 92 0.001838 0 0.000000 DP 0 287 94 0.001878 0 0.000000 DP 0 288 87 0.001738 0 0.000000 DP 0 289 82 0.001638 0 0.000000 DP 0 290 72 0.001439 0 0.000000 DP 0 291 90 0.001798 0 0.000000 DP 0 292 107 0.002138 0 0.000000 DP 0 293 78 0.001558 0 0.000000 DP 0 294 85 0.001698 0 0.000000 DP 0 295 97 0.001938 0 0.000000 DP 0 296 105 0.002098 0 0.000000 DP 0 297 97 0.001938 0 0.000000 DP 0 298 107 0.002138 0 0.000000 DP 0 299 117 0.002338 0 0.000000 DP 0 300 179 0.003577 0 0.000000 DP 0 301 100 0.001998 0 0.000000 DP 0 302 80 0.001598 0 0.000000 DP 0 303 74 0.001479 0 0.000000 DP 0 304 93 0.001858 0 0.000000 DP 0 305 105 0.002098 0 0.000000 DP 0 306 107 0.002138 0 0.000000 DP 0 307 142 0.002837 0 0.000000 DP 0 308 211 0.004216 0 0.000000 DP 0 309 99 0.001978 0 0.000000 DP 0 310 104 0.002078 0 0.000000 DP 0 311 90 0.001798 0 0.000000 DP 0 312 141 0.002817 0 0.000000 DP 0 313 162 0.003237 0 0.000000 DP 0 314 183 0.003656 0 0.000000 DP 0 315 166 0.003317 0 0.000000 DP 0 316 171 0.003417 0 0.000000 DP 0 317 122 0.002438 0 0.000000 DP 0 318 101 0.002018 0 0.000000 DP 0 319 83 0.001658 0 0.000000 DP 0 320 81 0.001618 0 0.000000 DP 0 321 73 0.001459 0 0.000000 DP 0 322 67 0.001339 0 0.000000 DP 0 323 77 0.001538 0 0.000000 DP 0 324 72 0.001439 0 0.000000 DP 0 325 52 0.001039 0 0.000000 DP 0 326 53 0.001059 0 0.000000 DP 0 327 66 0.001319 0 0.000000 DP 0 328 53 0.001059 0 0.000000 DP 0 329 64 0.001279 0 0.000000 DP 0 330 47 0.000939 0 0.000000 DP 0 331 60 0.001199 0 0.000000 DP 0 332 64 0.001279 0 0.000000 DP 0 333 86 0.001718 0 0.000000 DP 0 334 94 0.001878 0 0.000000 DP 0 335 115 0.002298 0 0.000000 DP 0 336 100 0.001998 0 0.000000 DP 0 337 192 0.003836 0 0.000000 DP 0 338 277 0.005535 0 0.000000 DP 0 339 184 0.003676 0 0.000000 DP 0 340 120 0.002398 0 0.000000 DP 0 341 92 0.001838 0 0.000000 DP 0 342 134 0.002677 0 0.000000 DP 0 343 212 0.004236 0 0.000000 DP 0 344 155 0.003097 0 0.000000 DP 0 345 144 0.002877 0 0.000000 DP 0 346 203 0.004056 0 0.000000 DP 0 347 112 0.002238 0 0.000000 DP 0 348 63 0.001259 0 0.000000 DP 0 349 63 0.001259 0 0.000000 DP 0 350 64 0.001279 0 0.000000 DP 0 351 68 0.001359 0 0.000000 DP 0 352 58 0.001159 0 0.000000 DP 0 353 66 0.001319 0 0.000000 DP 0 354 49 0.000979 0 0.000000 DP 0 355 52 0.001039 0 0.000000 DP 0 356 57 0.001139 0 0.000000 DP 0 357 55 0.001099 0 0.000000 DP 0 358 68 0.001359 0 0.000000 DP 0 359 82 0.001638 0 0.000000 DP 0 360 68 0.001359 0 0.000000 DP 0 361 97 0.001938 0 0.000000 DP 0 362 117 0.002338 0 0.000000 DP 0 363 85 0.001698 0 0.000000 DP 0 364 90 0.001798 0 0.000000 DP 0 365 116 0.002318 0 0.000000 DP 0 366 151 0.003017 0 0.000000 DP 0 367 157 0.003137 0 0.000000 DP 0 368 72 0.001439 0 0.000000 DP 0 369 80 0.001598 0 0.000000 DP 0 370 69 0.001379 0 0.000000 DP 0 371 76 0.001519 0 0.000000 DP 0 372 89 0.001778 0 0.000000 DP 0 373 86 0.001718 0 0.000000 DP 0 374 136 0.002717 0 0.000000 DP 0 375 132 0.002637 0 0.000000 DP 0 376 94 0.001878 0 0.000000 DP 0 377 71 0.001419 0 0.000000 DP 0 378 76 0.001519 0 0.000000 DP 0 379 89 0.001778 0 0.000000 DP 0 380 66 0.001319 0 0.000000 DP 0 381 58 0.001159 0 0.000000 DP 0 382 58 0.001159 0 0.000000 DP 0 383 47 0.000939 0 0.000000 DP 0 384 46 0.000919 0 0.000000 DP 0 385 56 0.001119 0 0.000000 DP 0 386 39 0.000779 0 0.000000 DP 0 387 29 0.000579 0 0.000000 DP 0 388 42 0.000839 0 0.000000 DP 0 389 31 0.000619 0 0.000000 DP 0 390 46 0.000919 0 0.000000 DP 0 391 45 0.000899 0 0.000000 DP 0 392 51 0.001019 0 0.000000 DP 0 393 34 0.000679 0 0.000000 DP 0 394 35 0.000699 0 0.000000 DP 0 395 38 0.000759 0 0.000000 DP 0 396 43 0.000859 0 0.000000 DP 0 397 47 0.000939 0 0.000000 DP 0 398 49 0.000979 0 0.000000 DP 0 399 37 0.000739 0 0.000000 DP 0 400 45 0.000899 0 0.000000 DP 0 401 39 0.000779 0 0.000000 DP 0 402 40 0.000799 0 0.000000 DP 0 403 50 0.000999 0 0.000000 DP 0 404 52 0.001039 0 0.000000 DP 0 405 65 0.001299 0 0.000000 DP 0 406 87 0.001738 0 0.000000 DP 0 407 112 0.002238 0 0.000000 DP 0 408 87 0.001738 0 0.000000 DP 0 409 94 0.001878 0 0.000000 DP 0 410 93 0.001858 0 0.000000 DP 0 411 79 0.001578 0 0.000000 DP 0 412 105 0.002098 0 0.000000 DP 0 413 67 0.001339 0 0.000000 DP 0 414 79 0.001578 0 0.000000 DP 0 415 88 0.001758 0 0.000000 DP 0 416 87 0.001738 0 0.000000 DP 0 417 131 0.002617 0 0.000000 DP 0 418 127 0.002538 0 0.000000 DP 0 419 87 0.001738 0 0.000000 DP 0 420 85 0.001698 0 0.000000 DP 0 421 60 0.001199 0 0.000000 DP 0 422 59 0.001179 0 0.000000 DP 0 423 60 0.001199 0 0.000000 DP 0 424 63 0.001259 0 0.000000 DP 0 425 42 0.000839 0 0.000000 DP 0 426 37 0.000739 0 0.000000 DP 0 427 41 0.000819 0 0.000000 DP 0 428 55 0.001099 0 0.000000 DP 0 429 58 0.001159 0 0.000000 DP 0 430 45 0.000899 0 0.000000 DP 0 431 50 0.000999 0 0.000000 DP 0 432 46 0.000919 0 0.000000 DP 0 433 59 0.001179 0 0.000000 DP 0 434 56 0.001119 0 0.000000 DP 0 435 63 0.001259 0 0.000000 DP 0 436 60 0.001199 0 0.000000 DP 0 437 48 0.000959 0 0.000000 DP 0 438 44 0.000879 0 0.000000 DP 0 439 64 0.001279 0 0.000000 DP 0 440 70 0.001399 0 0.000000 DP 0 441 70 0.001399 0 0.000000 DP 0 442 49 0.000979 0 0.000000 DP 0 443 63 0.001259 0 0.000000 DP 0 444 48 0.000959 0 0.000000 DP 0 445 51 0.001019 0 0.000000 DP 0 446 60 0.001199 0 0.000000 DP 0 447 74 0.001479 0 0.000000 DP 0 448 85 0.001698 0 0.000000 DP 0 449 91 0.001818 0 0.000000 DP 0 450 83 0.001658 0 0.000000 DP 0 451 70 0.001399 0 0.000000 DP 0 452 83 0.001658 0 0.000000 DP 0 453 91 0.001818 0 0.000000 DP 0 454 89 0.001778 0 0.000000 DP 0 455 94 0.001878 0 0.000000 DP 0 456 47 0.000939 0 0.000000 DP 0 457 62 0.001239 0 0.000000 DP 0 458 51 0.001019 0 0.000000 DP 0 459 45 0.000899 0 0.000000 DP 0 460 41 0.000819 0 0.000000 DP 0 461 40 0.000799 0 0.000000 DP 0 462 41 0.000819 0 0.000000 DP 0 463 47 0.000939 0 0.000000 DP 0 464 38 0.000759 0 0.000000 DP 0 465 54 0.001079 0 0.000000 DP 0 466 48 0.000959 0 0.000000 DP 0 467 45 0.000899 0 0.000000 DP 0 468 52 0.001039 0 0.000000 DP 0 469 39 0.000779 0 0.000000 DP 0 470 46 0.000919 0 0.000000 DP 0 471 50 0.000999 0 0.000000 DP 0 472 53 0.001059 0 0.000000 DP 0 473 78 0.001558 0 0.000000 DP 0 474 65 0.001299 0 0.000000 DP 0 475 35 0.000699 0 0.000000 DP 0 476 35 0.000699 0 0.000000 DP 0 477 36 0.000719 0 0.000000 DP 0 478 34 0.000679 0 0.000000 DP 0 479 30 0.000599 0 0.000000 DP 0 480 30 0.000599 0 0.000000 DP 0 481 63 0.001259 0 0.000000 DP 0 482 38 0.000759 0 0.000000 DP 0 483 41 0.000819 0 0.000000 DP 0 484 38 0.000759 0 0.000000 DP 0 485 29 0.000579 0 0.000000 DP 0 486 30 0.000599 0 0.000000 DP 0 487 45 0.000899 0 0.000000 DP 0 488 50 0.000999 0 0.000000 DP 0 489 44 0.000879 0 0.000000 DP 0 490 30 0.000599 0 0.000000 DP 0 491 26 0.000519 0 0.000000 DP 0 492 18 0.000360 0 0.000000 DP 0 493 24 0.000480 0 0.000000 DP 0 494 31 0.000619 0 0.000000 DP 0 495 35 0.000699 0 0.000000 DP 0 496 26 0.000519 0 0.000000 DP 0 497 39 0.000779 0 0.000000 DP 0 498 38 0.000759 0 0.000000 DP 0 499 30 0.000599 0 0.000000 DP 0 500 36 0.000719 0 0.000000 DP 0 >500 12604 0.251834 0 0.000000 # PSC, Per-sample counts. Note that the ref/het/hom counts include only SNPs, for indels see PSI. The rest include both SNPs and indels. # PSC [2]id [3]sample [4]nRefHom [5]nNonRefHom [6]nHets [7]nTransitions [8]nTransversions [9]nIndels [10]average depth [11]nSingletons [12]nHapRef [13]nHapAlt [14]nMissing PSC 0 HG002 0 1805673 2280497 2669532 1416638 918703 51.3 5004875 0 0 0 # PSI, Per-Sample Indels. Note that alt-het genotypes with both ins and del allele are counted twice, in both nInsHets and nDelHets. # PSI [2]id [3]sample [4]in-frame [5]out-frame [6]not applicable [7]out/(in+out) ratio [8]nInsHets [9]nDelHets [10]nInsAltHoms [11]nDelAltHoms PSI 0 HG002 0 0 0 0.00 303336 304256 152560 158551 # HWE # HWE [2]id [3]1st ALT allele frequency [4]Number of observations [5]25th percentile [6]median [7]75th percentile HWE 0 0.000000 2888090 0.990000 0.990000 0.990000 HWE 0 0.990000 2116785 0.000000 0.000000 0.000000 # VAF, Variant Allele Frequency determined as fraction of alternate reads in FORMAT/AD # VAF [2]id [3]sample [4]SNV VAF distribution [5]indel VAF distribution VAF 0 HG002 0,0,59,450,1220,5279,23595,86885,263833,483930,607649,464912,243080,75389,20938,6876,6494,10301,26067,82281,1676932 0,54,950,6042,19966,38399,59634,78440,105143,112434,102631,68196,40033,23360,20704,21046,23660,24942,32012,46685,94374