| 20260506 02:31:28.706 | INFO | Snapshot : (Legend) % CPU / Threads / ResMem GiB
| 20260506 02:31:28.707 | INFO | Snapshot : 0.0% / 3T / 0.0G
| 20260506 02:31:28.707 | INFO | Effective command line: /opt/pacbio/bin/baz2bam --splitControlRefLength=15000 --platform=REVIO --splitControlLength=10000 --stemLength=8 --minSubLength=100 --minHardAccuracy=-1 --minZmwLength=1 --process-log-interval=5000 --metadata=/data/icc/m84031_260504_231011_s1/metadata/m84031_260504_231011_s1_full_preview_23hr.metadata.xml --defaultZmwBatchSize=75 --maxInputQueueMB=3500 --flankLength=-1 --fileListStride=1 --statusfd=2 --startFileListIdx=0 --nProcs=24 --minSoftAccuracy=-1 --minFlankingScore=-1 --bamThreads=8 --minEmptyTime=60 --output=m84031_260504_231011_s1_full_preview_23hr --minInsertionLength=50 --bazThreads=2 --instrument-files-layout --maxNumZmwsToProcess=2147483647 --smrtMaskScoreThreshold=-1 --streamedBam --zmwOutputStride=0 --minSnr=0 --hqrfConfig=DEFAULT --process-log=NONE --emptyOutlierTime=3 --inlinePbi --whitelistZmwNum=0 --uuid=c2d51006-4171-4f34-9965-e8acec170309 --silent --whitelistZmwId=0 --samplePercent=100 --zmwBatchMB=250 --zmwHeaderBatchMB=10 --maxOutputQueueMB=5000 --log-level=INFO --log-file=/data/icc/m84031_260504_231011_s1/metadata/m84031_260504_231011_s1_full_preview_23hr.baz2bam.log /data/nrta/2/m84031_260504_231011_s1/pb_internal/baz/m84031_260504_231011_s1_full_preview.baz
| 20260506 02:31:28.707 | INFO | Start
| 20260506 02:31:28.707 | INFO | /opt/pacbio/bin/baz2bam --splitControlRefLength=15000 --platform=REVIO --splitControlLength=10000 --stemLength=8 --minSubLength=100 --minHardAccuracy=-1 --minZmwLength=1 --process-log-interval=5000 --metadata=/data/icc/m84031_260504_231011_s1/metadata/m84031_260504_231011_s1_full_preview_23hr.metadata.xml --defaultZmwBatchSize=75 --maxInputQueueMB=3500 --flankLength=-1 --fileListStride=1 --statusfd=2 --startFileListIdx=0 --nProcs=24 --minSoftAccuracy=-1 --minFlankingScore=-1 --bamThreads=8 --minEmptyTime=60 --output=m84031_260504_231011_s1_full_preview_23hr --minInsertionLength=50 --bazThreads=2 --instrument-files-layout --maxNumZmwsToProcess=2147483647 --smrtMaskScoreThreshold=-1 --streamedBam --zmwOutputStride=0 --minSnr=0 --hqrfConfig=DEFAULT --process-log=NONE --emptyOutlierTime=3 --inlinePbi --whitelistZmwNum=0 --uuid=c2d51006-4171-4f34-9965-e8acec170309 --silent --whitelistZmwId=0 --samplePercent=100 --zmwBatchMB=250 --zmwHeaderBatchMB=10 --maxOutputQueueMB=5000 --log-level=INFO --log-file=/data/icc/m84031_260504_231011_s1/metadata/m84031_260504_231011_s1_full_preview_23hr.baz2bam.log /data/nrta/2/m84031_260504_231011_s1/pb_internal/baz/m84031_260504_231011_s1_full_preview.baz
| 20260506 02:31:28.707 | INFO | commit hash: 2dc54f5a66f39b94662202d5514157d553e25f7d
| 20260506 02:31:28.707 | INFO | commit date: 2026-01-13 11:49:20 +0100
| 20260506 02:31:28.707 | INFO | Version: release/kestrel-13.5_2dc54f5a66f39b94662202d5514157d553e25f7d
| 20260506 02:31:28.708 | INFO | Roughly processing the first 2147483647 ZMWs, up to a slice boundary...
| 20260506 02:31:29.062 | INFO | Parsing "/data/icc/m84031_260504_231011_s1/metadata/m84031_260504_231011_s1_full_preview_23hr.metadata.xml"
| 20260506 02:31:29.063 | INFO | PPAAlgoConfig = {"adapterFinding":{"disableAdapterFinding":false,"leftAdapter":"CAACAACAACAACGGAGGAGGAGGAAAAG","rightAdapter":"CAACAACAACAACGGAGGAGGAGGAAAAG"},"controlFilter":{"disableControlFiltering":false,"leftAdapter":"TAGAGAGAGAAAAGGAGGAGGAGGCAACAACAACAACTCTCTCTA","rightAdapter":"TAGAGAGAGAAAAGGAGGAGGAGGCAACAACAACAACTCTCTCTA","sequence":"TCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGGCCGCATCCAGACTCAAATCAACGACCAGATCGCCTACCGGTTCAGCCATACCGGACTCCTCCTGCGATCCCTTCTGATACTGTCATCAGCATTACGTCATCCTCCGTCATGTCCGCCACATCCGGGGAAGCGGGGATAACTTCATTCCCGTCCGGGCCAAAGCGGACACCTCCGGCAAGCCCTGCCGCTTTCTGCAGCAGGCTCGCCAGCAGCGCACTGAGATCCAGCTGCCAGCGGGAAATACTGATGCGCAGCGCCGCCAGCGCATAAACGAAGCAGTCGAGTGCCTCATTGCGTCGCTTTTTGCTGTCCCACAGTATTTTTTTCCTGCCATCCACCCATTTTTCGACCTGCTCTTCAGCAGTCAGCTGCTGCGCTTCGGTCAGATCAAAAATAGGGTACCGAGCTCGAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTA"},"hqrf":{"method":"N2"},"inputFilter":{"minSnr":1.5},"outputFilter":{"zmwOutputStride":1}}
| 20260506 02:31:29.491 | INFO | 24 adapter callers have been configured with the standard method
| 20260506 02:31:29.492 | INFO | Created BAM Header comment:{
	"collection_metadata_xml" : "<suppressed>",
	"dataset_uuid" : "3bd380ef-b6bc-4bc7-87c9-819f8c0fc430",
	"external_resources" : 
	[
		{
			"file_name" : "../metadata/m84031_260504_231011_s1_full_preview_23hr.sts.xml",
			"meta_type" : "PacBio.SubreadFile.ChipStatsFile"
		}
	],
	"name" : "baz2bam_ccs_sideband",
	"subreadset_name" : "Acq13-Cell1",
	"version" : "1.2",
	"zmws" : 2560
}
| 20260506 02:31:29.492 | INFO | bam file: -
| 20260506 02:31:29.492 | INFO | bamThreads = 8
| 20260506 02:31:29.492 | INFO | Writing streaming BAM file to stdout
| 20260506 02:31:29.503 | INFO | ZOFFSET_CART_HMM configured
| 20260506 02:31:29.503 | INFO | Creating sts.h5 file "pb_internal/m84031_260504_231011_s1_full_preview_23hr.sts.h5" with parameters numHoles:2560 numAnalogs:4 numFilters:1
| 20260506 02:31:29.506 | INFO | Starting Baz2bam.	MovieName: /data/nrta/2/m84031_260504_231011_s1/pb_internal/baz/m84031_260504_231011_s1_full_preview.baz,  BaseCallerVersion: 5.0.0,  BazWriterVersion: 0.0.0,  BazVersion: 2.6.2,  OutputPrefix: "m84031_260504_231011_s1_full_preview_23hr",  ProdFileLayout: Kestrel,  Baz2bamVersion: release/kestrel-13.5_2dc54f5a66f39b94662202d5514157d553e25f7d
| 20260506 02:31:29.506 | INFO | Spawn 24 workers
| 20260506 02:31:29.749 | INFO | OOM score went from -1 to 1268
| 20260506 02:31:29.749 | INFO | Beginning read of next slice
| 20260506 02:31:30.749 | INFO | OOM score went from 1268 to 1270
| 20260506 02:31:31.750 | INFO | OOM score went from 1270 to 1271
| 20260506 02:31:31.773 | INFO | Finished read of next slice
| 20260506 02:31:31.773 | WARN | Anomalous profiling event (reported in ms):
| 20260506 02:31:31.773 | WARN |     READ_PROFILES measured slower than specified threshold of 3.40282e+38 standard deviations
| 20260506 02:31:31.773 | WARN |     IDs:       Historic mean +- stdev, [ Current Measurements ]
| 20260506 02:31:31.773 | WARN |     ----------------------------------------------------------
| 20260506 02:31:31.773 | WARN |     Full:      0.00e+00 +- 0.00e+00, [ 2.02e+03 ]
| 20260506 02:31:31.773 | WARN |     TOTAL:     2.32e-03 +- 0.00e+00, [ 2.32e-03 ]
| 20260506 02:31:31.773 | WARN |     READ_DATA: 2.02e+03 +- 0.00e+00, [ 2.02e+03 ]
| 20260506 02:31:31.773 | WARN |     SEND_DATA: 2.97e-02 +- 0.00e+00, [ 2.97e-02 ]
| 20260506 02:31:31.773 | INFO | Beginning read of next slice
| 20260506 02:31:32.713 | INFO | Finished read of next slice
| 20260506 02:31:32.714 | INFO | Beginning read of next slice
| 20260506 02:31:32.750 | INFO | OOM score went from 1271 to 1276
| 20260506 02:31:33.007 | INFO | Finished read of next slice
| 20260506 02:31:33.011 | INFO | Final Performance Profiling Results for READ_PROFILES: (reported in milliseconds)
| 20260506 02:31:33.011 | INFO |     PerfReport: Gathered 3 samples.
| 20260506 02:31:33.011 | INFO |     PerfReport: % Compute,	FullMean/OutlierMean  FullDev/OutlierDev
| 20260506 02:31:33.011 | INFO |     PerfReport: 		Full Execution	-- 1.09e+03 / 2.02e+03,	8.74e+02 / 0.00e+00
| 20260506 02:31:33.011 | INFO |     PerfReport: 0.00%,	     TOTAL -- 1.35e-03 / 2.32e-03,	1.03e-03 / 0.00e+00
| 20260506 02:31:33.011 | INFO |     PerfReport: 100.00%,	 READ_DATA -- 1.09e+03 / 2.02e+03,	8.74e+02 / 0.00e+00
| 20260506 02:31:33.011 | INFO |     PerfReport: 0.00%,	 SEND_DATA -- 2.69e-02 / 2.97e-02,	1.25e-02 / 0.00e+00
| 20260506 02:31:33.708 | INFO | Snapshot : 704.9% / 39T / 3.8G
| 20260506 02:31:33.751 | INFO | Sending progress 0.175389
| 20260506 02:31:34.751 | INFO | Sending progress 0.472652
| 20260506 02:31:35.752 | INFO | Sending progress 0.882804
| 20260506 02:31:35.909 | INFO | Closing BAM files
| 20260506 02:31:35.909 | INFO | Writing PBI files
| 20260506 02:31:36.753 | INFO | Sending progress 0.999990
| 20260506 02:31:38.711 | INFO | Snapshot : 620.2% / 16T / 4.7G
| 20260506 02:31:43.711 | INFO | Snapshot : 2.0% / 16T / 4.6G
| 20260506 02:31:48.708 | INFO | Snapshot : 8.6% / 16T / 4.5G
| 20260506 02:31:53.710 | INFO | Snapshot : 5.4% / 16T / 4.5G
| 20260506 02:31:58.711 | INFO | Snapshot : 3.4% / 16T / 4.4G
| 20260506 02:32:02.975 | INFO | Corrected missing adapter (>35% per ZMW) in 30 ZMWs, 2.00267% of 1498 total ZMWs with adapters
| 20260506 02:32:02.975 | INFO | Corrected missed adapter (<=35% per ZMW) in 106 ZMWs, 7.0761% of 1498 total ZMWs with adapters
| 20260506 02:32:02.975 | INFO | Corrected adapters in 136 ZMWs, 9.07877% of 1498 total ZMWs with adapters
| 20260506 02:32:02.975 | INFO | Adapter Correction imputed 306 of 10668 total adapters (2.86839%)
| 20260506 02:32:02.975 | INFO | Opening file "metadata/m84031_260504_231011_s1_full_preview_23hr.sts.xml.tmp"
| 20260506 02:32:03.000 | INFO | Renaming file "metadata/m84031_260504_231011_s1_full_preview_23hr.sts.xml.tmp" -> "metadata/m84031_260504_231011_s1_full_preview_23hr.sts.xml"
| 20260506 02:32:03.072 | INFO | BAM files closed and PBIs written
| 20260506 02:32:03.072 | INFO | Closing sts.h5 file
| 20260506 02:32:03.074 | INFO | sts.h5 file closed and written
| 20260506 02:32:03.074 | INFO | Finished ZMW processing 2560
| 20260506 02:32:03.074 | INFO | Finished
| 20260506 02:32:03.074 | INFO | Final Performance Profiling Results for COMPUTE_PROFILES: (reported in milliseconds)
| 20260506 02:32:03.074 | INFO |     PerfReport: Gathered 5879 samples.
| 20260506 02:32:03.074 | INFO |     PerfReport: % Compute,	FullMean/OutlierMean  FullDev/OutlierDev
| 20260506 02:32:03.074 | INFO |     PerfReport: 		Full Execution	-- 2.20e+01 / -nan,	1.57e+02 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 45.61%,	      DATA_WAIT -- 1.00e+01 / 0.00e+00,	6.82e-01 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 0.01%,	      DATA_MOVE -- 1.86e-01 / 0.00e+00,	7.69e-02 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 0.00%,	      DATA_SEND -- 5.62e-02 / 0.00e+00,	8.63e-03 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 5.18%,	   PARSE_BINARY -- 2.62e+00 / 0.00e+00,	3.35e+00 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 2.00%,	PROCESS_PACKETS -- 1.01e+00 / 0.00e+00,	1.98e+00 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 4.58%,	      FIND_HQRF -- 2.32e+00 / 0.00e+00,	2.06e+00 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 4.90%,	   FIND_INSERTS -- 2.48e+00 / 0.00e+00,	5.27e+00 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 0.03%,	     PROD_STATS -- 1.41e-02 / 0.00e+00,	1.49e-02 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 32.18%,	   FIND_SUBREAD -- 1.63e+01 / 0.00e+00,	1.90e+01 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 4.97%,	      ZMW_STATS -- 2.51e+00 / 0.00e+00,	3.58e+00 / 0.00e+00
| 20260506 02:32:03.074 | INFO |     PerfReport: 0.54%,	       FINALIZE -- 2.75e-01 / 0.00e+00,	1.56e+00 / 0.00e+00
| 20260506 02:32:03.074 | INFO | joining thread pool
| 20260506 02:32:03.074 | INFO | joining loggingThread_
| 20260506 02:32:03.709 | INFO | Snapshot : 4.0% / 4T / 4.1G
| 20260506 02:32:03.823 | INFO | joining done
| 20260506 02:32:03.823 | INFO | ~ConvertBaz2BamDestroyed
| 20260506 02:32:03.823 | INFO | Remap Stats:  shiftedHqRegionStart = 1683 noStartOnLabelTransition = 0 noEndOnLabelTransition = 0
| 20260506 02:32:04.656 | INFO | Run Time : 35s 950ms 
| 20260506 02:32:04.656 | INFO | CPU Time : 1m 7s 
| 20260506 02:32:04.656 | INFO | Peak RSS : 4.712 GB
| 20260506 02:32:04.656 | INFO | Exit code : 0