# This file was produced by bcftools stats (1.20+htslib-1.20) and can be plotted using plot-vcfstats. # The command line was: bcftools stats --samples HG002 --fasta-ref human_GRCh38_no_alt_analysis_set.fasta - # # Definition of sets: # ID [2]id [3]tab-separated file names ID 0 # SN, Summary numbers: # number of records .. number of data rows in the VCF # number of no-ALTs .. reference-only sites, ALT is either "." or identical to REF # number of SNPs .. number of rows with a SNP # number of MNPs .. number of rows with a MNP, such as CC>TT # number of indels .. number of rows with an indel # number of others .. number of rows with other type, for example a symbolic allele or # a complex substitution, such as ACT>TCGA # number of multiallelic sites .. number of rows with multiple alternate alleles # number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs # # Note that rows containing multiple types will be counted multiple times, in each # counter. For example, a row with a SNP and an indel increments both the SNP and # the indel counter. # # SN [2]id [3]key [4]value SN 0 number of samples: 1 SN 0 number of records: 5020189 SN 0 number of no-ALTs: 0 SN 0 number of SNPs: 4084477 SN 0 number of MNPs: 0 SN 0 number of indels: 935709 SN 0 number of others: 3 SN 0 number of multiallelic sites: 0 SN 0 number of multiallelic SNP sites: 0 # TSTV, transitions/transversions: # TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT) TSTV 0 2668743 1415734 1.89 2668743 1415734 1.89 # ICS, Indel context summary: # ICS [2]id [3]repeat-consistent [4]repeat-inconsistent [5]not applicable [6]c/(c+i) ratio ICS 0 224760 22606 688343 0.9086 # ICL, Indel context by length: # ICL [2]id [3]length of repeat element [4]repeat-consistent deletions) [5]repeat-inconsistent deletions [6]consistent insertions [7]inconsistent insertions [8]c/(c+i) ratio ICL 0 2 68976 3481 66987 5869 0.9357 ICL 0 3 14317 1935 8696 2434 0.8404 ICL 0 4 26185 2105 21978 2746 0.9085 ICL 0 5 6562 809 4949 963 0.8666 ICL 0 6 1952 445 1152 516 0.7636 ICL 0 7 716 225 210 258 0.6572 ICL 0 8 813 198 221 208 0.7181 ICL 0 9 481 90 111 91 0.7658 ICL 0 10 377 123 77 110 0.6608 # SiS, Singleton stats: # SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable SiS 0 1 2282492 1532419 750073 619806 165735 14448 439623 # AF, Stats by non-reference allele frequency: # AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable AF 0 0.000000 2282492 1532419 750073 619806 165735 14448 439623 AF 0 0.990000 1801985 1136324 665661 315903 59025 8158 248720 # QUAL, Stats by quality # QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels QUAL 0 19.5 116 49 67 36 QUAL 0 19.6 523 253 270 153 QUAL 0 19.7 743 396 347 222 QUAL 0 19.8 897 458 439 233 QUAL 0 19.9 1089 573 516 258 QUAL 0 20.0 1160 599 561 282 QUAL 0 20.1 1291 691 600 283 QUAL 0 20.2 1361 694 667 336 QUAL 0 20.3 1427 745 682 294 QUAL 0 20.4 1461 752 709 346 QUAL 0 20.5 1556 801 755 341 QUAL 0 20.6 1623 822 801 354 QUAL 0 20.7 1634 842 792 367 QUAL 0 20.8 1676 829 847 342 QUAL 0 20.9 1748 886 862 323 QUAL 0 21.0 1823 940 883 381 QUAL 0 21.1 1779 935 844 350 QUAL 0 21.2 1878 956 922 367 QUAL 0 21.3 1837 966 871 361 QUAL 0 21.4 1966 974 992 371 QUAL 0 21.5 1976 979 997 381 QUAL 0 21.6 2038 1051 987 379 QUAL 0 21.7 2076 1032 1044 403 QUAL 0 21.8 2040 1052 988 425 QUAL 0 21.9 2128 1078 1050 402 QUAL 0 22.0 2115 1093 1022 416 QUAL 0 22.1 2204 1078 1126 570 QUAL 0 22.2 2121 1062 1059 651 QUAL 0 22.3 2221 1097 1124 755 QUAL 0 22.4 2247 1129 1118 788 QUAL 0 22.5 2166 1122 1044 860 QUAL 0 22.6 2326 1192 1134 987 QUAL 0 22.7 2353 1173 1180 1029 QUAL 0 22.8 2332 1197 1135 993 QUAL 0 22.9 2429 1174 1255 1057 QUAL 0 23.0 2503 1247 1256 1076 QUAL 0 23.1 2388 1217 1171 1121 QUAL 0 23.2 2483 1253 1230 1105 QUAL 0 23.3 2463 1254 1209 1104 QUAL 0 23.4 2544 1295 1249 1155 QUAL 0 23.5 2499 1282 1217 1181 QUAL 0 23.6 2581 1357 1224 1188 QUAL 0 23.7 2598 1317 1281 1184 QUAL 0 23.8 2519 1292 1227 1269 QUAL 0 23.9 2658 1364 1294 1246 QUAL 0 24.0 2604 1286 1318 1279 QUAL 0 24.1 2647 1324 1323 1241 QUAL 0 24.2 2716 1407 1309 1238 QUAL 0 24.3 2746 1391 1355 1275 QUAL 0 24.4 2775 1478 1297 1347 QUAL 0 24.5 2735 1408 1327 1263 QUAL 0 24.6 2848 1456 1392 1340 QUAL 0 24.7 2880 1469 1411 1297 QUAL 0 24.8 2998 1535 1463 1232 QUAL 0 24.9 2934 1501 1433 1404 QUAL 0 25.0 2935 1523 1412 1445 QUAL 0 25.1 2941 1541 1400 1375 QUAL 0 25.2 3071 1553 1518 1481 QUAL 0 25.3 3066 1577 1489 1456 QUAL 0 25.4 3235 1709 1526 1459 QUAL 0 25.5 3000 1486 1514 1486 QUAL 0 25.6 3110 1604 1506 1438 QUAL 0 25.7 3153 1644 1509 1519 QUAL 0 25.8 3159 1643 1516 1486 QUAL 0 25.9 3302 1729 1573 1528 QUAL 0 26.0 3255 1716 1539 1547 QUAL 0 26.1 3234 1687 1547 1552 QUAL 0 26.2 3389 1757 1632 1579 QUAL 0 26.3 3326 1773 1553 1515 QUAL 0 26.4 3369 1757 1612 1529 QUAL 0 26.5 3381 1717 1664 1580 QUAL 0 26.6 3400 1779 1621 1547 QUAL 0 26.7 3462 1729 1733 1595 QUAL 0 26.8 3302 1723 1579 1562 QUAL 0 26.9 3336 1762 1574 1673 QUAL 0 27.0 3534 1823 1711 1677 QUAL 0 27.1 3456 1830 1626 1714 QUAL 0 27.2 3426 1742 1684 1691 QUAL 0 27.3 3544 1836 1708 1734 QUAL 0 27.4 3522 1798 1724 1663 QUAL 0 27.5 3576 1846 1730 1712 QUAL 0 27.6 3694 1918 1776 1702 QUAL 0 27.7 3602 1930 1672 1758 QUAL 0 27.8 3462 1780 1682 1815 QUAL 0 27.9 3561 1907 1654 1736 QUAL 0 28.0 3540 1808 1732 1785 QUAL 0 28.1 3590 1845 1745 1767 QUAL 0 28.2 3651 1878 1773 1806 QUAL 0 28.3 3725 1913 1812 1839 QUAL 0 28.4 3646 1972 1674 1836 QUAL 0 28.5 3709 1897 1812 1854 QUAL 0 28.6 3763 2036 1727 1920 QUAL 0 28.7 3753 2033 1720 1973 QUAL 0 28.8 3718 1954 1764 1915 QUAL 0 28.9 3746 1965 1781 1805 QUAL 0 29.0 3678 1948 1730 1927 QUAL 0 29.1 3713 1983 1730 1872 QUAL 0 29.2 3802 2035 1767 1964 QUAL 0 29.3 3796 2048 1748 1936 QUAL 0 29.4 3825 2013 1812 1914 QUAL 0 29.5 3909 2117 1792 1928 QUAL 0 29.6 3881 2049 1832 2065 QUAL 0 29.7 3988 2153 1835 1971 QUAL 0 29.8 4022 2219 1803 2058 QUAL 0 29.9 3945 2109 1836 1927 QUAL 0 30.0 4164 2283 1881 2002 QUAL 0 30.1 4001 2182 1819 1991 QUAL 0 30.2 4059 2235 1824 1981 QUAL 0 30.3 4094 2180 1914 2073 QUAL 0 30.4 4208 2289 1919 2126 QUAL 0 30.5 4065 2284 1781 2072 QUAL 0 30.6 4361 2447 1914 2015 QUAL 0 30.7 4380 2419 1961 1992 QUAL 0 30.8 4327 2417 1910 2061 QUAL 0 30.9 4413 2463 1950 2082 QUAL 0 31.0 4394 2465 1929 2099 QUAL 0 31.1 4586 2599 1987 2132 QUAL 0 31.2 4572 2678 1894 2103 QUAL 0 31.3 4725 2638 2087 2200 QUAL 0 31.4 4845 2787 2058 2141 QUAL 0 31.5 4798 2732 2066 2237 QUAL 0 31.6 4883 2754 2129 2225 QUAL 0 31.7 4887 2818 2069 2210 QUAL 0 31.8 4995 2893 2102 2225 QUAL 0 31.9 5038 2961 2077 2216 QUAL 0 32.0 5184 3013 2171 2268 QUAL 0 32.1 5279 3061 2218 2275 QUAL 0 32.2 5386 3141 2245 2316 QUAL 0 32.3 5294 3078 2216 2306 QUAL 0 32.4 5514 3239 2275 2431 QUAL 0 32.5 5477 3202 2275 2383 QUAL 0 32.6 5377 3120 2257 2424 QUAL 0 32.7 5776 3443 2333 2449 QUAL 0 32.8 5630 3407 2223 2457 QUAL 0 32.9 5860 3431 2429 2466 QUAL 0 33.0 5947 3506 2441 2526 QUAL 0 33.1 5965 3587 2378 2557 QUAL 0 33.2 6071 3613 2458 2585 QUAL 0 33.3 6038 3710 2328 2589 QUAL 0 33.4 6270 3778 2492 2617 QUAL 0 33.5 6245 3745 2500 2607 QUAL 0 33.6 6502 3938 2564 2701 QUAL 0 33.7 6466 3871 2595 2675 QUAL 0 33.8 6556 4036 2520 2768 QUAL 0 33.9 6320 3933 2387 2679 QUAL 0 34.0 6373 3876 2497 2684 QUAL 0 34.1 6500 3893 2607 2847 QUAL 0 34.2 6604 4049 2555 2710 QUAL 0 34.3 6743 4056 2687 2777 QUAL 0 34.4 6619 4049 2570 2815 QUAL 0 34.5 6648 4144 2504 2785 QUAL 0 34.6 6699 4121 2578 2806 QUAL 0 34.7 6522 4034 2488 2858 QUAL 0 34.8 6607 4058 2549 2830 QUAL 0 34.9 6630 4135 2495 2878 QUAL 0 35.0 6568 4058 2510 2812 QUAL 0 35.1 6646 4117 2529 2980 QUAL 0 35.2 6487 3980 2507 2907 QUAL 0 35.3 6489 4039 2450 2847 QUAL 0 35.4 6618 3999 2619 2940 QUAL 0 35.5 6524 4095 2429 2899 QUAL 0 35.6 6459 4058 2401 2995 QUAL 0 35.7 6596 4087 2509 2994 QUAL 0 35.8 6651 4146 2505 2906 QUAL 0 35.9 6560 4086 2474 3026 QUAL 0 36.0 6409 4024 2385 2959 QUAL 0 36.1 6349 3942 2407 2889 QUAL 0 36.2 6413 4009 2404 3052 QUAL 0 36.3 6499 4018 2481 2961 QUAL 0 36.4 6340 3991 2349 2908 QUAL 0 36.5 6431 4065 2366 3012 QUAL 0 36.6 6300 4021 2279 3014 QUAL 0 36.7 6202 3872 2330 3066 QUAL 0 36.8 6280 3929 2351 2929 QUAL 0 36.9 6247 3849 2398 3072 QUAL 0 37.0 6463 4098 2365 2914 QUAL 0 37.1 6103 3787 2316 2955 QUAL 0 37.2 6114 3902 2212 2943 QUAL 0 37.3 6266 3924 2342 2838 QUAL 0 37.4 6106 3865 2241 2949 QUAL 0 37.5 6037 3834 2203 2809 QUAL 0 37.6 6284 3953 2331 2858 QUAL 0 37.7 6211 3974 2237 2756 QUAL 0 37.8 6043 3765 2278 2756 QUAL 0 37.9 6225 3987 2238 2680 QUAL 0 38.0 6221 3930 2291 2625 QUAL 0 38.1 6140 3897 2243 2686 QUAL 0 38.2 6215 3923 2292 2671 QUAL 0 38.3 6234 3981 2253 2657 QUAL 0 38.4 6356 3914 2442 2561 QUAL 0 38.5 6505 4170 2335 2560 QUAL 0 38.6 6398 4092 2306 2554 QUAL 0 38.7 6450 4084 2366 2574 QUAL 0 38.8 6631 4228 2403 2476 QUAL 0 38.9 6491 4158 2333 2442 QUAL 0 39.0 6485 4161 2324 2488 QUAL 0 39.1 6679 4210 2469 2439 QUAL 0 39.2 6773 4315 2458 2426 QUAL 0 39.3 6726 4228 2498 2395 QUAL 0 39.4 6707 4273 2434 2357 QUAL 0 39.5 6844 4361 2483 2293 QUAL 0 39.6 7019 4619 2400 2307 QUAL 0 39.7 7008 4485 2523 2238 QUAL 0 39.8 7180 4547 2633 2408 QUAL 0 39.9 7164 4660 2504 2308 QUAL 0 40.0 7090 4584 2506 2252 QUAL 0 40.1 7496 4855 2641 2272 QUAL 0 40.2 7427 4834 2593 2273 QUAL 0 40.3 7568 4920 2648 2343 QUAL 0 40.4 7786 5019 2767 2313 QUAL 0 40.5 7776 5048 2728 2203 QUAL 0 40.6 8097 5302 2795 2303 QUAL 0 40.7 8115 5319 2796 2146 QUAL 0 40.8 8121 5393 2728 2315 QUAL 0 40.9 8329 5463 2866 2163 QUAL 0 41.0 8886 5777 3109 2227 QUAL 0 41.1 8989 5917 3072 2215 QUAL 0 41.2 9026 6065 2961 2193 QUAL 0 41.3 9243 6137 3106 2222 QUAL 0 41.4 9482 6289 3193 2210 QUAL 0 41.5 9860 6517 3343 2081 QUAL 0 41.6 10111 6737 3374 2151 QUAL 0 41.7 10301 6766 3535 2204 QUAL 0 41.8 10361 6910 3451 2229 QUAL 0 41.9 10912 7350 3562 2231 QUAL 0 42.0 11208 7493 3715 2189 QUAL 0 42.1 11486 7654 3832 2219 QUAL 0 42.2 11754 7926 3828 2277 QUAL 0 42.3 12096 8063 4033 2246 QUAL 0 42.4 12501 8405 4096 2260 QUAL 0 42.5 12881 8594 4287 2304 QUAL 0 42.6 13284 8953 4331 2206 QUAL 0 42.7 13549 9156 4393 2203 QUAL 0 42.8 13742 9142 4600 2216 QUAL 0 42.9 14468 9681 4787 2257 QUAL 0 43.0 14772 9927 4845 2295 QUAL 0 43.1 15251 10342 4909 2300 QUAL 0 43.2 15489 10477 5012 2264 QUAL 0 43.3 15927 10740 5187 2272 QUAL 0 43.4 16353 11028 5325 2197 QUAL 0 43.5 16793 11405 5388 2289 QUAL 0 43.6 17096 11520 5576 2215 QUAL 0 43.7 17683 11915 5768 2180 QUAL 0 43.8 18195 12241 5954 2103 QUAL 0 43.9 18542 12571 5971 2068 QUAL 0 44.0 19197 12944 6253 2123 QUAL 0 44.1 19649 13344 6305 2145 QUAL 0 44.2 19896 13416 6480 2132 QUAL 0 44.3 20465 13843 6622 2112 QUAL 0 44.4 20929 14099 6830 2069 QUAL 0 44.5 21351 14411 6940 2015 QUAL 0 44.6 21667 14707 6960 2041 QUAL 0 44.7 22065 14918 7147 1984 QUAL 0 44.8 22421 15220 7201 2013 QUAL 0 44.9 22851 15541 7310 1976 QUAL 0 45.0 23433 15790 7643 1925 QUAL 0 45.1 23701 16195 7506 2039 QUAL 0 45.2 24333 16547 7786 1867 QUAL 0 45.3 24236 16568 7668 1878 QUAL 0 45.4 24515 16592 7923 1874 QUAL 0 45.5 25002 17086 7916 1919 QUAL 0 45.6 25208 17054 8154 1841 QUAL 0 45.7 25515 17267 8248 1823 QUAL 0 45.8 25523 17520 8003 1834 QUAL 0 45.9 26053 17786 8267 1860 QUAL 0 46.0 26225 17844 8381 1800 QUAL 0 46.1 26678 18088 8590 1864 QUAL 0 46.2 26761 18288 8473 1839 QUAL 0 46.3 26602 18115 8487 1845 QUAL 0 46.4 26662 18204 8458 1813 QUAL 0 46.5 26867 18263 8604 1734 QUAL 0 46.6 26756 18315 8441 1707 QUAL 0 46.7 26517 18094 8423 1656 QUAL 0 46.8 26550 18056 8494 1668 QUAL 0 46.9 26615 18106 8509 1715 QUAL 0 47.0 26787 18383 8404 1616 QUAL 0 47.1 26537 18150 8387 1644 QUAL 0 47.2 26496 18044 8452 1669 QUAL 0 47.3 26383 18133 8250 1728 QUAL 0 47.4 26061 17790 8271 1671 QUAL 0 47.5 25726 17807 7919 1537 QUAL 0 47.6 25546 17443 8103 1575 QUAL 0 47.7 25413 17386 8027 1522 QUAL 0 47.8 24823 16890 7933 1605 QUAL 0 47.9 24403 16751 7652 1565 QUAL 0 48.0 24164 16428 7736 1544 QUAL 0 48.1 23687 16302 7385 1520 QUAL 0 48.2 23099 15827 7272 1556 QUAL 0 48.3 23032 15873 7159 1537 QUAL 0 48.4 22351 15378 6973 1550 QUAL 0 48.5 21428 14633 6795 1541 QUAL 0 48.6 20827 14314 6513 1505 QUAL 0 48.7 20061 13817 6244 1538 QUAL 0 48.8 19046 12950 6096 1517 QUAL 0 48.9 18071 12403 5668 1530 QUAL 0 49.0 17221 11789 5432 1527 QUAL 0 49.1 15827 10765 5062 1476 QUAL 0 49.2 15168 10266 4902 1531 QUAL 0 49.3 13716 9352 4364 1509 QUAL 0 49.4 12457 8523 3934 1474 QUAL 0 49.5 11247 7610 3637 1428 QUAL 0 49.6 10175 6883 3292 1574 QUAL 0 49.7 9026 6029 2997 1517 QUAL 0 49.8 7893 5307 2586 1492 QUAL 0 49.9 7036 4635 2401 1492 QUAL 0 50.0 6365 4159 2206 1588 QUAL 0 50.1 5470 3633 1837 1530 QUAL 0 50.2 4898 3176 1722 1520 QUAL 0 50.3 4294 2780 1514 1503 QUAL 0 50.4 3994 2605 1389 1477 QUAL 0 50.5 3625 2361 1264 1540 QUAL 0 50.6 3360 2195 1165 1494 QUAL 0 50.7 3230 2074 1156 1505 QUAL 0 50.8 3133 2030 1103 1512 QUAL 0 50.9 2837 1779 1058 1431 QUAL 0 51.0 2790 1825 965 1497 QUAL 0 51.1 2667 1691 976 1500 QUAL 0 51.2 2645 1701 944 1502 QUAL 0 51.3 2592 1652 940 1535 QUAL 0 51.4 2550 1655 895 1457 QUAL 0 51.5 2569 1646 923 1505 QUAL 0 51.6 2510 1633 877 1477 QUAL 0 51.7 2529 1628 901 1518 QUAL 0 51.8 2600 1656 944 1499 QUAL 0 51.9 2625 1690 935 1516 QUAL 0 52.0 2601 1671 930 1557 QUAL 0 52.1 2666 1704 962 1547 QUAL 0 52.2 2645 1676 969 1525 QUAL 0 52.3 2800 1793 1007 1498 QUAL 0 52.4 2772 1778 994 1489 QUAL 0 52.5 2781 1810 971 1575 QUAL 0 52.6 2807 1812 995 1495 QUAL 0 52.7 2838 1851 987 1501 QUAL 0 52.8 3001 1936 1065 1621 QUAL 0 52.9 2908 1843 1065 1575 QUAL 0 53.0 2994 1965 1029 1523 QUAL 0 53.1 3132 2049 1083 1495 QUAL 0 53.2 3137 2052 1085 1515 QUAL 0 53.3 3207 2101 1106 1494 QUAL 0 53.4 3377 2228 1149 1550 QUAL 0 53.5 3266 2153 1113 1489 QUAL 0 53.6 3560 2314 1246 1481 QUAL 0 53.7 3532 2314 1218 1523 QUAL 0 53.8 3634 2401 1233 1535 QUAL 0 53.9 3799 2499 1300 1504 QUAL 0 54.0 3639 2421 1218 1465 QUAL 0 54.1 3892 2583 1309 1547 QUAL 0 54.2 3917 2594 1323 1490 QUAL 0 54.3 4034 2708 1326 1516 QUAL 0 54.4 4150 2742 1408 1463 QUAL 0 54.5 4249 2815 1434 1468 QUAL 0 54.6 4536 3015 1521 1450 QUAL 0 54.7 4459 2995 1464 1360 QUAL 0 54.8 4603 3063 1540 1353 QUAL 0 54.9 4890 3256 1634 1415 QUAL 0 55.0 4672 3083 1589 1337 QUAL 0 55.1 4945 3242 1703 1316 QUAL 0 55.2 5004 3363 1641 1375 QUAL 0 55.3 5229 3473 1756 1288 QUAL 0 55.4 5592 3743 1849 1282 QUAL 0 55.5 5345 3576 1769 1280 QUAL 0 55.6 5799 3821 1978 1280 QUAL 0 55.7 5853 3930 1923 1242 QUAL 0 55.8 6065 4123 1942 1266 QUAL 0 55.9 5891 3971 1920 1228 QUAL 0 56.0 6188 4193 1995 1217 QUAL 0 56.1 6315 4223 2092 1195 QUAL 0 56.2 6646 4457 2189 1201 QUAL 0 56.3 6330 4308 2022 1223 QUAL 0 56.4 6995 4698 2297 1234 QUAL 0 56.5 6468 4376 2092 1241 QUAL 0 56.6 6994 4679 2315 1168 QUAL 0 56.7 7051 4739 2312 1147 QUAL 0 56.8 7253 4896 2357 1134 QUAL 0 56.9 7294 4943 2351 1176 QUAL 0 57.0 7044 4705 2339 1126 QUAL 0 57.1 7570 5148 2422 1148 QUAL 0 57.2 7705 5203 2502 1079 QUAL 0 57.3 7125 4813 2312 1123 QUAL 0 57.4 7789 5240 2549 1164 QUAL 0 57.5 7585 5121 2464 1094 QUAL 0 57.6 7655 5164 2491 1120 QUAL 0 57.7 7978 5447 2531 1125 QUAL 0 57.8 7943 5334 2609 1047 QUAL 0 57.9 7521 5038 2483 1024 QUAL 0 58.0 8302 5663 2639 1121 QUAL 0 58.1 8042 5467 2575 1044 QUAL 0 58.2 7691 5293 2398 1016 QUAL 0 58.3 8174 5542 2632 1012 QUAL 0 58.4 8531 5687 2844 1000 QUAL 0 58.5 8185 5536 2649 1003 QUAL 0 58.6 8074 5471 2603 1002 QUAL 0 58.7 8759 5955 2804 957 QUAL 0 58.8 8776 5907 2869 990 QUAL 0 58.9 8598 5883 2715 971 QUAL 0 59.0 8429 5724 2705 945 QUAL 0 59.1 9114 6164 2950 969 QUAL 0 59.2 9245 6317 2928 884 QUAL 0 59.3 8729 5991 2738 938 QUAL 0 59.4 8613 5819 2794 905 QUAL 0 59.5 9606 6511 3095 877 QUAL 0 59.6 9433 6388 3045 861 QUAL 0 59.7 9509 6362 3147 845 QUAL 0 59.8 9143 6290 2853 907 QUAL 0 59.9 9014 6208 2806 844 QUAL 0 60.0 10087 6767 3320 852 QUAL 0 60.1 9736 6582 3154 861 QUAL 0 60.2 9746 6620 3126 905 QUAL 0 60.3 9369 6452 2917 818 QUAL 0 60.4 9067 6211 2856 773 QUAL 0 60.5 9937 6833 3104 778 QUAL 0 60.6 10367 7106 3261 736 QUAL 0 60.7 10215 7037 3178 817 QUAL 0 60.8 10215 6856 3359 865 QUAL 0 60.9 9485 6528 2957 753 QUAL 0 61.0 9469 6509 2960 744 QUAL 0 61.1 9903 6698 3205 754 QUAL 0 61.2 10517 7238 3279 767 QUAL 0 61.3 10262 6962 3300 762 QUAL 0 61.4 10165 6875 3290 736 QUAL 0 61.5 10351 7064 3287 770 QUAL 0 61.6 9658 6617 3041 725 QUAL 0 61.7 9317 6359 2958 713 QUAL 0 61.8 9589 6533 3056 711 QUAL 0 61.9 10644 7290 3354 705 QUAL 0 62.0 10316 7049 3267 673 QUAL 0 62.1 10278 7031 3247 681 QUAL 0 62.2 10463 7110 3353 653 QUAL 0 62.3 10004 6794 3210 685 QUAL 0 62.4 9576 6570 3006 648 QUAL 0 62.5 9515 6543 2972 622 QUAL 0 62.6 9146 6318 2828 643 QUAL 0 62.7 9833 6725 3108 682 QUAL 0 62.8 10790 7326 3464 627 QUAL 0 62.9 10516 7136 3380 630 QUAL 0 63.0 10096 6934 3162 609 QUAL 0 63.1 10094 6885 3209 678 QUAL 0 63.2 10212 6863 3349 646 QUAL 0 63.3 9504 6501 3003 582 QUAL 0 63.4 9459 6486 2973 591 QUAL 0 63.5 9015 6234 2781 595 QUAL 0 63.6 8900 6096 2804 604 QUAL 0 63.7 8646 5955 2691 602 QUAL 0 63.8 9965 6828 3137 594 QUAL 0 63.9 10888 7407 3481 540 QUAL 0 64.0 10778 7374 3404 528 QUAL 0 64.1 10622 7260 3362 606 QUAL 0 64.2 10273 6995 3278 553 QUAL 0 64.3 10250 7005 3245 583 QUAL 0 64.4 9859 6738 3121 499 QUAL 0 64.5 10199 6842 3357 563 QUAL 0 64.6 9182 6271 2911 521 QUAL 0 64.7 9144 6349 2795 510 QUAL 0 64.8 9001 6216 2785 571 QUAL 0 64.9 8772 5984 2788 567 QUAL 0 65.0 8372 5634 2738 504 QUAL 0 65.1 8535 5895 2640 499 QUAL 0 65.2 8057 5482 2575 457 QUAL 0 65.3 10288 6962 3326 496 QUAL 0 65.4 10410 7114 3296 493 QUAL 0 65.5 9951 6888 3063 452 QUAL 0 65.6 9734 6695 3039 514 QUAL 0 65.7 9598 6549 3049 476 QUAL 0 65.8 9392 6496 2896 494 QUAL 0 65.9 9236 6309 2927 466 QUAL 0 66.0 9110 6241 2869 511 QUAL 0 66.1 8827 6009 2818 437 QUAL 0 66.2 9370 6327 3043 472 QUAL 0 66.3 8649 5909 2740 479 QUAL 0 66.4 8346 5695 2651 446 QUAL 0 66.5 8044 5494 2550 488 QUAL 0 66.6 7903 5434 2469 455 QUAL 0 66.7 7773 5367 2406 458 QUAL 0 66.8 7475 5100 2375 473 QUAL 0 66.9 7263 4981 2282 487 QUAL 0 67.0 7381 4998 2383 484 QUAL 0 67.1 7117 4849 2268 467 QUAL 0 67.2 6859 4673 2186 498 QUAL 0 67.3 6695 4568 2127 469 QUAL 0 67.4 6586 4463 2123 424 QUAL 0 67.5 4533 3042 1491 382 QUAL 0 67.6 3785 2605 1180 392 QUAL 0 67.7 3705 2535 1170 355 QUAL 0 67.8 3696 2544 1152 400 QUAL 0 67.9 3486 2379 1107 397 QUAL 0 68.0 3428 2360 1068 384 QUAL 0 68.1 3417 2321 1096 426 QUAL 0 68.2 3364 2307 1057 426 QUAL 0 68.3 3207 2235 972 421 QUAL 0 68.4 3131 2138 993 395 QUAL 0 68.5 3072 2089 983 393 QUAL 0 68.6 3068 2053 1015 410 QUAL 0 68.7 2963 2019 944 392 QUAL 0 68.8 2841 1989 852 396 QUAL 0 68.9 2761 1905 856 403 QUAL 0 69.0 2772 1877 895 397 QUAL 0 69.1 2633 1853 780 404 QUAL 0 69.2 3676 2212 1464 411 QUAL 0 69.3 2720 1827 893 442 QUAL 0 69.4 2578 1738 840 367 QUAL 0 69.5 2409 1626 783 395 QUAL 0 69.6 2346 1637 709 366 QUAL 0 69.7 2401 1620 781 379 QUAL 0 69.8 2271 1563 708 385 QUAL 0 69.9 2249 1517 732 374 QUAL 0 70.0 2196 1513 683 351 QUAL 0 70.1 2159 1481 678 351 QUAL 0 70.2 2141 1479 662 373 QUAL 0 70.3 1970 1328 642 324 QUAL 0 70.4 1979 1319 660 328 QUAL 0 70.5 1892 1281 611 343 QUAL 0 70.6 1936 1318 618 334 QUAL 0 70.7 1817 1263 554 321 QUAL 0 70.8 1879 1276 603 353 QUAL 0 70.9 1778 1228 550 317 QUAL 0 71.0 1708 1199 509 335 QUAL 0 71.1 1666 1138 528 340 QUAL 0 71.2 1695 1168 527 302 QUAL 0 71.3 1641 1127 514 314 QUAL 0 71.4 1589 1093 496 338 QUAL 0 71.5 1520 1018 502 307 QUAL 0 71.6 1529 1037 492 325 QUAL 0 71.7 1453 987 466 301 QUAL 0 71.8 1424 957 467 305 QUAL 0 71.9 1363 933 430 313 QUAL 0 72.0 1354 947 407 336 QUAL 0 72.1 1339 894 445 321 QUAL 0 72.2 1387 965 422 334 QUAL 0 72.3 80 50 30 295 QUAL 0 72.4 92 54 38 289 QUAL 0 72.5 80 47 33 283 QUAL 0 72.6 78 42 36 303 QUAL 0 72.7 89 51 38 286 QUAL 0 72.8 81 38 43 297 QUAL 0 72.9 87 49 38 312 QUAL 0 73.0 65 34 31 283 QUAL 0 73.1 72 41 31 297 QUAL 0 73.2 70 37 33 278 QUAL 0 73.3 61 29 32 260 QUAL 0 73.4 64 33 31 254 QUAL 0 73.5 61 37 24 237 QUAL 0 73.6 56 31 25 248 QUAL 0 73.7 78 53 25 308 QUAL 0 73.8 56 32 24 251 QUAL 0 73.9 68 48 20 257 QUAL 0 74.0 48 24 24 250 QUAL 0 74.1 65 38 27 262 QUAL 0 74.2 48 22 26 239 QUAL 0 74.3 51 35 16 262 QUAL 0 74.4 54 28 26 249 QUAL 0 74.5 44 29 15 232 QUAL 0 74.6 46 27 19 231 QUAL 0 74.7 42 24 18 263 QUAL 0 74.8 55 29 26 277 QUAL 0 74.9 49 25 24 251 QUAL 0 75.0 39 23 16 235 QUAL 0 75.1 44 26 18 238 QUAL 0 75.2 38 21 17 236 QUAL 0 75.3 47 27 20 239 QUAL 0 75.4 40 29 11 229 QUAL 0 75.5 37 25 12 228 QUAL 0 75.6 35 23 12 219 QUAL 0 75.7 40 29 11 208 QUAL 0 75.8 34 16 18 233 QUAL 0 75.9 41 21 20 234 QUAL 0 76.0 48 26 22 208 QUAL 0 76.1 31 16 15 204 QUAL 0 76.2 45 22 23 241 QUAL 0 76.3 38 25 13 244 QUAL 0 76.4 34 17 17 221 QUAL 0 76.5 34 14 20 221 QUAL 0 76.6 31 20 11 196 QUAL 0 76.7 34 14 20 182 QUAL 0 76.8 36 17 19 193 QUAL 0 76.9 30 21 9 196 QUAL 0 77.0 39 23 16 199 QUAL 0 77.1 44 21 23 239 QUAL 0 77.2 36 17 19 215 QUAL 0 77.3 24 13 11 209 QUAL 0 77.4 30 14 16 242 QUAL 0 77.5 31 21 10 206 QUAL 0 77.6 26 14 12 180 QUAL 0 77.7 25 13 12 185 QUAL 0 77.8 38 20 18 165 QUAL 0 77.9 29 21 8 177 QUAL 0 78.0 29 9 20 165 QUAL 0 78.1 31 22 9 171 QUAL 0 78.2 31 15 16 157 QUAL 0 78.3 26 15 11 169 QUAL 0 78.4 21 11 10 188 QUAL 0 78.5 30 18 12 166 QUAL 0 78.6 21 16 5 146 QUAL 0 78.7 18 10 8 162 QUAL 0 78.8 27 15 12 166 QUAL 0 78.9 23 17 6 175 QUAL 0 79.0 28 11 17 164 QUAL 0 79.1 30 13 17 143 QUAL 0 79.2 20 10 10 150 QUAL 0 79.3 25 13 12 177 QUAL 0 79.4 28 20 8 149 QUAL 0 79.5 27 16 11 173 QUAL 0 79.6 29 20 9 136 QUAL 0 79.7 22 12 10 161 QUAL 0 79.8 17 9 8 188 QUAL 0 79.9 19 11 8 134 QUAL 0 80.0 24 15 9 152 QUAL 0 80.1 19 10 9 159 QUAL 0 80.2 23 13 10 180 QUAL 0 80.3 20 8 12 168 QUAL 0 80.4 15 6 9 153 QUAL 0 80.5 13 6 7 141 QUAL 0 80.6 25 16 9 105 QUAL 0 80.7 15 7 8 128 QUAL 0 80.8 24 11 13 144 QUAL 0 80.9 14 4 10 155 QUAL 0 81.0 19 10 9 124 QUAL 0 81.1 20 11 9 128 QUAL 0 81.2 17 13 4 147 QUAL 0 81.3 21 9 12 133 QUAL 0 81.4 19 7 12 141 QUAL 0 81.5 6 5 1 161 QUAL 0 81.6 22 13 9 139 QUAL 0 81.7 26 8 18 135 QUAL 0 81.8 16 9 7 144 QUAL 0 81.9 14 8 6 151 QUAL 0 82.0 15 5 10 166 QUAL 0 82.1 15 11 4 167 QUAL 0 82.2 22 15 7 165 QUAL 0 82.3 16 10 6 157 QUAL 0 82.4 16 7 9 149 QUAL 0 82.5 11 5 6 148 QUAL 0 82.6 13 8 5 152 QUAL 0 82.7 18 13 5 131 QUAL 0 82.8 15 4 11 182 QUAL 0 82.9 24 14 10 150 QUAL 0 83.0 18 11 7 133 QUAL 0 83.1 18 9 9 168 QUAL 0 83.2 27 10 17 130 QUAL 0 83.3 11 7 4 141 QUAL 0 83.4 16 11 5 143 QUAL 0 83.5 19 9 10 126 QUAL 0 83.6 11 5 6 168 QUAL 0 83.7 15 9 6 131 QUAL 0 83.8 17 13 4 150 QUAL 0 83.9 17 8 9 167 QUAL 0 84.0 17 11 6 158 QUAL 0 84.1 11 8 3 168 QUAL 0 84.2 13 8 5 124 QUAL 0 84.3 13 7 6 124 QUAL 0 84.4 24 13 11 150 QUAL 0 84.5 14 5 9 140 QUAL 0 84.6 12 5 7 129 QUAL 0 84.7 17 6 11 143 QUAL 0 84.8 15 7 8 192 QUAL 0 84.9 14 3 11 160 QUAL 0 85.0 6 4 2 137 QUAL 0 85.1 12 2 10 140 QUAL 0 85.2 15 7 8 140 QUAL 0 85.3 22 8 14 179 QUAL 0 85.4 14 4 10 128 QUAL 0 85.5 14 5 9 175 QUAL 0 85.6 10 6 4 142 QUAL 0 85.7 9 3 6 92 QUAL 0 85.8 10 5 5 165 QUAL 0 85.9 14 5 9 147 QUAL 0 86.0 8 6 2 160 QUAL 0 86.1 14 10 4 154 QUAL 0 86.2 8 3 5 152 QUAL 0 86.3 15 6 9 169 QUAL 0 86.4 11 6 5 153 QUAL 0 86.5 11 5 6 183 QUAL 0 86.6 7 5 2 143 QUAL 0 86.7 14 9 5 148 QUAL 0 86.8 10 1 9 153 QUAL 0 86.9 7 2 5 178 QUAL 0 87.0 13 4 9 166 QUAL 0 87.1 20 10 10 149 QUAL 0 87.2 9 5 4 167 QUAL 0 87.3 8 5 3 143 QUAL 0 87.4 10 6 4 175 QUAL 0 87.5 10 4 6 150 QUAL 0 87.6 14 11 3 175 QUAL 0 87.7 9 4 5 132 QUAL 0 87.8 22 12 10 156 QUAL 0 87.9 13 8 5 139 QUAL 0 88.0 14 9 5 153 QUAL 0 88.1 12 9 3 175 QUAL 0 88.2 15 6 9 166 QUAL 0 88.3 13 6 7 195 QUAL 0 88.4 11 4 7 206 QUAL 0 88.5 14 6 8 192 QUAL 0 88.6 5 0 5 143 QUAL 0 88.7 8 4 4 172 QUAL 0 88.8 19 8 11 193 QUAL 0 88.9 9 7 2 149 QUAL 0 89.0 11 5 6 155 QUAL 0 89.1 8 7 1 163 QUAL 0 89.2 22 9 13 183 QUAL 0 89.3 5 2 3 195 QUAL 0 89.4 11 3 8 170 QUAL 0 89.5 15 7 8 154 QUAL 0 89.6 13 5 8 179 QUAL 0 89.7 8 3 5 157 QUAL 0 89.8 15 9 6 149 QUAL 0 89.9 16 8 8 161 QUAL 0 90.0 17 6 11 167 QUAL 0 90.1 9 4 5 140 QUAL 0 90.2 11 5 6 162 QUAL 0 90.3 14 6 8 164 QUAL 0 90.4 12 4 8 197 QUAL 0 90.5 10 6 4 144 QUAL 0 90.6 14 3 11 168 QUAL 0 90.7 18 9 9 178 QUAL 0 90.8 10 6 4 186 QUAL 0 90.9 9 5 4 190 QUAL 0 91.0 16 8 8 188 QUAL 0 91.1 10 8 2 207 QUAL 0 91.2 18 10 8 164 QUAL 0 91.3 15 8 7 182 QUAL 0 91.4 8 4 4 154 QUAL 0 91.5 14 8 6 176 QUAL 0 91.6 12 7 5 198 QUAL 0 91.7 10 4 6 182 QUAL 0 91.8 13 7 6 185 QUAL 0 91.9 16 9 7 206 QUAL 0 92.0 13 5 8 171 QUAL 0 92.1 20 7 13 172 QUAL 0 92.2 16 9 7 198 QUAL 0 92.3 9 4 5 129 QUAL 0 92.4 13 4 9 179 QUAL 0 92.5 12 4 8 179 QUAL 0 92.6 18 7 11 215 QUAL 0 92.7 13 8 5 186 QUAL 0 92.8 6 3 3 159 QUAL 0 92.9 10 4 6 207 QUAL 0 93.0 10 4 6 174 QUAL 0 93.1 10 2 8 186 QUAL 0 93.2 9 3 6 164 QUAL 0 93.3 13 5 8 223 QUAL 0 93.4 13 4 9 169 QUAL 0 93.5 14 6 8 224 QUAL 0 93.6 15 6 9 205 QUAL 0 93.7 9 3 6 182 QUAL 0 93.8 10 6 4 190 QUAL 0 93.9 15 8 7 207 QUAL 0 94.0 12 6 6 211 QUAL 0 94.1 17 6 11 203 QUAL 0 94.2 14 8 6 246 QUAL 0 94.3 14 6 8 175 QUAL 0 94.4 15 7 8 211 QUAL 0 94.5 11 3 8 191 QUAL 0 94.6 14 4 10 204 QUAL 0 94.7 14 9 5 210 QUAL 0 94.8 17 8 9 225 QUAL 0 94.9 13 6 7 215 QUAL 0 95.0 13 6 7 191 QUAL 0 95.1 13 6 7 223 QUAL 0 95.2 12 7 5 224 QUAL 0 95.3 17 10 7 229 QUAL 0 95.4 9 4 5 211 QUAL 0 95.5 13 3 10 218 QUAL 0 95.6 14 4 10 199 QUAL 0 95.7 12 6 6 269 QUAL 0 95.8 12 5 7 212 QUAL 0 95.9 15 7 8 203 QUAL 0 96.0 16 8 8 227 QUAL 0 96.1 12 7 5 221 QUAL 0 96.2 13 4 9 209 QUAL 0 96.3 18 5 13 211 QUAL 0 96.4 10 6 4 167 QUAL 0 96.5 11 7 4 181 QUAL 0 96.6 19 10 9 250 QUAL 0 96.7 13 3 10 204 QUAL 0 96.8 16 9 7 184 QUAL 0 96.9 7 1 6 177 QUAL 0 97.0 9 3 6 184 QUAL 0 97.1 12 5 7 257 QUAL 0 97.2 10 7 3 214 QUAL 0 97.3 22 11 11 205 QUAL 0 97.4 6 3 3 222 QUAL 0 97.5 12 5 7 194 QUAL 0 97.6 13 5 8 212 QUAL 0 97.7 22 11 11 234 QUAL 0 97.8 13 7 6 225 QUAL 0 97.9 15 4 11 215 QUAL 0 98.0 4 2 2 222 QUAL 0 98.1 16 9 7 243 QUAL 0 98.2 13 5 8 237 QUAL 0 98.3 10 4 6 232 QUAL 0 98.4 17 7 10 252 QUAL 0 98.5 12 4 8 182 QUAL 0 98.6 13 7 6 270 QUAL 0 98.7 12 6 6 243 QUAL 0 98.8 9 2 7 259 QUAL 0 98.9 16 6 10 226 QUAL 0 99.0 44598 18019 26579 115916 # IDD, InDel distribution: # IDD [2]id [3]length (deletions negative) [4]number of sites [5]number of genotypes [6]mean VAF IDD 0 -60 328 328 0.87 IDD 0 -59 14 14 0.72 IDD 0 -58 26 26 0.80 IDD 0 -57 17 17 0.58 IDD 0 -56 41 41 0.60 IDD 0 -55 26 26 0.67 IDD 0 -54 57 57 0.64 IDD 0 -53 41 41 0.61 IDD 0 -52 87 87 0.66 IDD 0 -51 47 47 0.61 IDD 0 -50 115 115 0.61 IDD 0 -49 102 102 0.61 IDD 0 -48 161 161 0.60 IDD 0 -47 78 78 0.62 IDD 0 -46 125 125 0.61 IDD 0 -45 94 94 0.61 IDD 0 -44 154 154 0.64 IDD 0 -43 84 84 0.59 IDD 0 -42 181 181 0.61 IDD 0 -41 121 121 0.64 IDD 0 -40 312 312 0.61 IDD 0 -39 134 134 0.62 IDD 0 -38 257 257 0.59 IDD 0 -37 158 158 0.62 IDD 0 -36 389 389 0.59 IDD 0 -35 181 181 0.57 IDD 0 -34 315 315 0.60 IDD 0 -33 196 196 0.59 IDD 0 -32 511 511 0.58 IDD 0 -31 232 232 0.62 IDD 0 -30 627 627 0.57 IDD 0 -29 287 287 0.60 IDD 0 -28 782 782 0.58 IDD 0 -27 360 360 0.58 IDD 0 -26 697 698 0.57 IDD 0 -25 494 494 0.59 IDD 0 -24 1269 1269 0.57 IDD 0 -23 437 437 0.59 IDD 0 -22 1064 1064 0.55 IDD 0 -21 575 575 0.58 IDD 0 -20 2179 2179 0.54 IDD 0 -19 741 741 0.56 IDD 0 -18 1909 1909 0.54 IDD 0 -17 937 937 0.56 IDD 0 -16 3423 3423 0.54 IDD 0 -15 1916 1916 0.55 IDD 0 -14 3155 3155 0.53 IDD 0 -13 1783 1783 0.54 IDD 0 -12 7168 7168 0.53 IDD 0 -11 2167 2167 0.53 IDD 0 -10 6740 6740 0.52 IDD 0 -9 3635 3635 0.54 IDD 0 -8 12366 12366 0.53 IDD 0 -7 4563 4563 0.54 IDD 0 -6 14571 14571 0.54 IDD 0 -5 12806 12806 0.58 IDD 0 -4 46538 46538 0.58 IDD 0 -3 30245 30245 0.56 IDD 0 -2 81837 81837 0.56 IDD 0 -1 219340 219340 0.61 IDD 0 1 220182 4304659 0.71 IDD 0 2 81691 81691 0.54 IDD 0 3 28571 28571 0.56 IDD 0 4 44944 44944 0.57 IDD 0 5 11815 11815 0.57 IDD 0 6 14129 14129 0.49 IDD 0 7 4077 4077 0.50 IDD 0 8 12316 12316 0.48 IDD 0 9 3282 3282 0.52 IDD 0 10 6319 6319 0.46 IDD 0 11 1942 1942 0.51 IDD 0 12 6900 6900 0.47 IDD 0 13 1430 1430 0.52 IDD 0 14 2859 2859 0.44 IDD 0 15 1749 1749 0.51 IDD 0 16 3363 3363 0.46 IDD 0 17 819 819 0.54 IDD 0 18 1781 1781 0.44 IDD 0 19 622 622 0.56 IDD 0 20 2170 2170 0.45 IDD 0 21 617 617 0.55 IDD 0 22 931 931 0.44 IDD 0 23 427 427 0.55 IDD 0 24 1366 1366 0.45 IDD 0 25 472 472 0.53 IDD 0 26 687 687 0.45 IDD 0 27 340 340 0.57 IDD 0 28 776 776 0.45 IDD 0 29 263 263 0.55 IDD 0 30 608 608 0.46 IDD 0 31 219 219 0.57 IDD 0 32 505 505 0.45 IDD 0 33 182 182 0.53 IDD 0 34 310 310 0.46 IDD 0 35 195 195 0.52 IDD 0 36 384 384 0.45 IDD 0 37 155 155 0.58 IDD 0 38 230 230 0.48 IDD 0 39 127 127 0.55 IDD 0 40 302 302 0.49 IDD 0 41 121 121 0.55 IDD 0 42 185 185 0.51 IDD 0 43 88 88 0.54 IDD 0 44 177 177 0.47 IDD 0 45 100 100 0.51 IDD 0 46 143 143 0.48 IDD 0 47 77 77 0.53 IDD 0 48 182 182 0.51 IDD 0 49 130 130 0.56 IDD 0 50 148 148 0.48 IDD 0 51 82 82 0.51 IDD 0 52 138 138 0.50 IDD 0 53 69 69 0.53 IDD 0 54 106 106 0.50 IDD 0 55 61 61 0.49 IDD 0 56 111 111 0.47 IDD 0 57 70 70 0.51 IDD 0 58 71 71 0.54 IDD 0 59 59 59 0.53 IDD 0 60 4339 4341 0.47 # ST, Substitution types: # ST [2]id [3]type [4]count ST 0 A>C 177214 ST 0 A>G 651280 ST 0 A>T 160977 ST 0 C>A 180181 ST 0 C>G 186461 ST 0 C>T 684278 ST 0 G>A 680281 ST 0 G>C 183903 ST 0 G>T 184906 ST 0 T>A 160440 ST 0 T>C 652904 ST 0 T>G 181652 # DP, Depth distribution # DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites (%) DP 0 2 350 0.006972 0 0.000000 DP 0 3 527 0.010498 0 0.000000 DP 0 4 824 0.016414 0 0.000000 DP 0 5 1613 0.032130 0 0.000000 DP 0 6 2835 0.056472 0 0.000000 DP 0 7 3618 0.072069 0 0.000000 DP 0 8 4257 0.084798 0 0.000000 DP 0 9 4996 0.099518 0 0.000000 DP 0 10 5153 0.102646 0 0.000000 DP 0 11 5481 0.109179 0 0.000000 DP 0 12 5782 0.115175 0 0.000000 DP 0 13 6281 0.125115 0 0.000000 DP 0 14 6313 0.125752 0 0.000000 DP 0 15 6704 0.133541 0 0.000000 DP 0 16 7010 0.139636 0 0.000000 DP 0 17 8438 0.168081 0 0.000000 DP 0 18 9294 0.185132 0 0.000000 DP 0 19 10299 0.205152 0 0.000000 DP 0 20 12355 0.246106 0 0.000000 DP 0 21 13749 0.273874 0 0.000000 DP 0 22 15233 0.303435 0 0.000000 DP 0 23 16893 0.336501 0 0.000000 DP 0 24 18360 0.365723 0 0.000000 DP 0 25 20020 0.398790 0 0.000000 DP 0 26 21655 0.431358 0 0.000000 DP 0 27 23284 0.463807 0 0.000000 DP 0 28 25881 0.515538 0 0.000000 DP 0 29 28070 0.559142 0 0.000000 DP 0 30 32077 0.638960 0 0.000000 DP 0 31 36608 0.729216 0 0.000000 DP 0 32 42468 0.845944 0 0.000000 DP 0 33 49263 0.981298 0 0.000000 DP 0 34 58231 1.159936 0 0.000000 DP 0 35 68606 1.366602 0 0.000000 DP 0 36 80698 1.607469 0 0.000000 DP 0 37 93722 1.866902 0 0.000000 DP 0 38 107609 2.143525 0 0.000000 DP 0 39 122444 2.439032 0 0.000000 DP 0 40 137848 2.745873 0 0.000000 DP 0 41 154413 3.075840 0 0.000000 DP 0 42 169613 3.378618 0 0.000000 DP 0 43 182621 3.637732 0 0.000000 DP 0 44 195021 3.884734 0 0.000000 DP 0 45 203964 4.062875 0 0.000000 DP 0 46 212332 4.229562 0 0.000000 DP 0 47 217756 4.337606 0 0.000000 DP 0 48 219208 4.366529 0 0.000000 DP 0 49 218298 4.348402 0 0.000000 DP 0 50 212305 4.229024 0 0.000000 DP 0 51 205235 4.088193 0 0.000000 DP 0 52 196745 3.919076 0 0.000000 DP 0 53 181679 3.618967 0 0.000000 DP 0 54 169130 3.368997 0 0.000000 DP 0 55 154694 3.081438 0 0.000000 DP 0 56 138745 2.763741 0 0.000000 DP 0 57 122689 2.443912 0 0.000000 DP 0 58 108375 2.158783 0 0.000000 DP 0 59 93040 1.853317 0 0.000000 DP 0 60 78679 1.567252 0 0.000000 DP 0 61 66036 1.315409 0 0.000000 DP 0 62 55038 1.096333 0 0.000000 DP 0 63 45438 0.905105 0 0.000000 DP 0 64 37660 0.750171 0 0.000000 DP 0 65 30091 0.599400 0 0.000000 DP 0 66 24610 0.490221 0 0.000000 DP 0 67 19813 0.394666 0 0.000000 DP 0 68 15203 0.302837 0 0.000000 DP 0 69 11463 0.228338 0 0.000000 DP 0 70 9111 0.181487 0 0.000000 DP 0 71 6693 0.133322 0 0.000000 DP 0 72 5364 0.106849 0 0.000000 DP 0 73 4301 0.085674 0 0.000000 DP 0 74 3282 0.065376 0 0.000000 DP 0 75 2606 0.051910 0 0.000000 DP 0 76 2401 0.047827 0 0.000000 DP 0 77 2199 0.043803 0 0.000000 DP 0 78 2147 0.042767 0 0.000000 DP 0 79 1567 0.031214 0 0.000000 DP 0 80 1418 0.028246 0 0.000000 DP 0 81 1506 0.029999 0 0.000000 DP 0 82 1455 0.028983 0 0.000000 DP 0 83 1472 0.029322 0 0.000000 DP 0 84 1363 0.027150 0 0.000000 DP 0 85 1145 0.022808 0 0.000000 DP 0 86 1258 0.025059 0 0.000000 DP 0 87 1257 0.025039 0 0.000000 DP 0 88 1153 0.022967 0 0.000000 DP 0 89 1084 0.021593 0 0.000000 DP 0 90 1183 0.023565 0 0.000000 DP 0 91 1151 0.022927 0 0.000000 DP 0 92 1100 0.021912 0 0.000000 DP 0 93 1043 0.020776 0 0.000000 DP 0 94 1007 0.020059 0 0.000000 DP 0 95 1142 0.022748 0 0.000000 DP 0 96 1235 0.024601 0 0.000000 DP 0 97 1364 0.027170 0 0.000000 DP 0 98 1247 0.024840 0 0.000000 DP 0 99 1265 0.025198 0 0.000000 DP 0 100 1175 0.023405 0 0.000000 DP 0 101 1132 0.022549 0 0.000000 DP 0 102 1161 0.023127 0 0.000000 DP 0 103 1064 0.021194 0 0.000000 DP 0 104 1259 0.025079 0 0.000000 DP 0 105 1293 0.025756 0 0.000000 DP 0 106 1249 0.024880 0 0.000000 DP 0 107 1101 0.021931 0 0.000000 DP 0 108 825 0.016434 0 0.000000 DP 0 109 912 0.018167 0 0.000000 DP 0 110 842 0.016772 0 0.000000 DP 0 111 807 0.016075 0 0.000000 DP 0 112 810 0.016135 0 0.000000 DP 0 113 689 0.013725 0 0.000000 DP 0 114 703 0.014003 0 0.000000 DP 0 115 901 0.017948 0 0.000000 DP 0 116 855 0.017031 0 0.000000 DP 0 117 770 0.015338 0 0.000000 DP 0 118 741 0.014760 0 0.000000 DP 0 119 767 0.015278 0 0.000000 DP 0 120 697 0.013884 0 0.000000 DP 0 121 708 0.014103 0 0.000000 DP 0 122 785 0.015637 0 0.000000 DP 0 123 673 0.013406 0 0.000000 DP 0 124 564 0.011235 0 0.000000 DP 0 125 646 0.012868 0 0.000000 DP 0 126 711 0.014163 0 0.000000 DP 0 127 673 0.013406 0 0.000000 DP 0 128 727 0.014482 0 0.000000 DP 0 129 778 0.015497 0 0.000000 DP 0 130 585 0.011653 0 0.000000 DP 0 131 544 0.010836 0 0.000000 DP 0 132 759 0.015119 0 0.000000 DP 0 133 716 0.014262 0 0.000000 DP 0 134 593 0.011812 0 0.000000 DP 0 135 514 0.010239 0 0.000000 DP 0 136 634 0.012629 0 0.000000 DP 0 137 495 0.009860 0 0.000000 DP 0 138 582 0.011593 0 0.000000 DP 0 139 527 0.010498 0 0.000000 DP 0 140 525 0.010458 0 0.000000 DP 0 141 605 0.012051 0 0.000000 DP 0 142 461 0.009183 0 0.000000 DP 0 143 482 0.009601 0 0.000000 DP 0 144 478 0.009522 0 0.000000 DP 0 145 541 0.010776 0 0.000000 DP 0 146 641 0.012768 0 0.000000 DP 0 147 496 0.009880 0 0.000000 DP 0 148 501 0.009980 0 0.000000 DP 0 149 567 0.011294 0 0.000000 DP 0 150 602 0.011992 0 0.000000 DP 0 151 651 0.012968 0 0.000000 DP 0 152 610 0.012151 0 0.000000 DP 0 153 516 0.010278 0 0.000000 DP 0 154 541 0.010776 0 0.000000 DP 0 155 504 0.010039 0 0.000000 DP 0 156 404 0.008048 0 0.000000 DP 0 157 455 0.009063 0 0.000000 DP 0 158 502 0.010000 0 0.000000 DP 0 159 611 0.012171 0 0.000000 DP 0 160 470 0.009362 0 0.000000 DP 0 161 404 0.008048 0 0.000000 DP 0 162 509 0.010139 0 0.000000 DP 0 163 486 0.009681 0 0.000000 DP 0 164 491 0.009781 0 0.000000 DP 0 165 451 0.008984 0 0.000000 DP 0 166 428 0.008526 0 0.000000 DP 0 167 484 0.009641 0 0.000000 DP 0 168 396 0.007888 0 0.000000 DP 0 169 412 0.008207 0 0.000000 DP 0 170 351 0.006992 0 0.000000 DP 0 171 347 0.006912 0 0.000000 DP 0 172 412 0.008207 0 0.000000 DP 0 173 417 0.008306 0 0.000000 DP 0 174 471 0.009382 0 0.000000 DP 0 175 330 0.006573 0 0.000000 DP 0 176 349 0.006952 0 0.000000 DP 0 177 411 0.008187 0 0.000000 DP 0 178 360 0.007171 0 0.000000 DP 0 179 435 0.008665 0 0.000000 DP 0 180 323 0.006434 0 0.000000 DP 0 181 312 0.006215 0 0.000000 DP 0 182 313 0.006235 0 0.000000 DP 0 183 370 0.007370 0 0.000000 DP 0 184 314 0.006255 0 0.000000 DP 0 185 311 0.006195 0 0.000000 DP 0 186 331 0.006593 0 0.000000 DP 0 187 371 0.007390 0 0.000000 DP 0 188 308 0.006135 0 0.000000 DP 0 189 299 0.005956 0 0.000000 DP 0 190 345 0.006872 0 0.000000 DP 0 191 280 0.005577 0 0.000000 DP 0 192 266 0.005299 0 0.000000 DP 0 193 275 0.005478 0 0.000000 DP 0 194 343 0.006832 0 0.000000 DP 0 195 316 0.006295 0 0.000000 DP 0 196 354 0.007052 0 0.000000 DP 0 197 254 0.005060 0 0.000000 DP 0 198 245 0.004880 0 0.000000 DP 0 199 267 0.005319 0 0.000000 DP 0 200 213 0.004243 0 0.000000 DP 0 201 218 0.004342 0 0.000000 DP 0 202 210 0.004183 0 0.000000 DP 0 203 226 0.004502 0 0.000000 DP 0 204 227 0.004522 0 0.000000 DP 0 205 228 0.004542 0 0.000000 DP 0 206 246 0.004900 0 0.000000 DP 0 207 264 0.005259 0 0.000000 DP 0 208 326 0.006494 0 0.000000 DP 0 209 314 0.006255 0 0.000000 DP 0 210 288 0.005737 0 0.000000 DP 0 211 224 0.004462 0 0.000000 DP 0 212 245 0.004880 0 0.000000 DP 0 213 222 0.004422 0 0.000000 DP 0 214 208 0.004143 0 0.000000 DP 0 215 204 0.004064 0 0.000000 DP 0 216 256 0.005099 0 0.000000 DP 0 217 216 0.004303 0 0.000000 DP 0 218 263 0.005239 0 0.000000 DP 0 219 239 0.004761 0 0.000000 DP 0 220 223 0.004442 0 0.000000 DP 0 221 246 0.004900 0 0.000000 DP 0 222 232 0.004621 0 0.000000 DP 0 223 206 0.004103 0 0.000000 DP 0 224 177 0.003526 0 0.000000 DP 0 225 186 0.003705 0 0.000000 DP 0 226 229 0.004562 0 0.000000 DP 0 227 270 0.005378 0 0.000000 DP 0 228 241 0.004801 0 0.000000 DP 0 229 261 0.005199 0 0.000000 DP 0 230 411 0.008187 0 0.000000 DP 0 231 272 0.005418 0 0.000000 DP 0 232 324 0.006454 0 0.000000 DP 0 233 227 0.004522 0 0.000000 DP 0 234 243 0.004840 0 0.000000 DP 0 235 264 0.005259 0 0.000000 DP 0 236 190 0.003785 0 0.000000 DP 0 237 209 0.004163 0 0.000000 DP 0 238 294 0.005856 0 0.000000 DP 0 239 215 0.004283 0 0.000000 DP 0 240 289 0.005757 0 0.000000 DP 0 241 221 0.004402 0 0.000000 DP 0 242 154 0.003068 0 0.000000 DP 0 243 143 0.002848 0 0.000000 DP 0 244 155 0.003088 0 0.000000 DP 0 245 165 0.003287 0 0.000000 DP 0 246 201 0.004004 0 0.000000 DP 0 247 191 0.003805 0 0.000000 DP 0 248 201 0.004004 0 0.000000 DP 0 249 172 0.003426 0 0.000000 DP 0 250 153 0.003048 0 0.000000 DP 0 251 123 0.002450 0 0.000000 DP 0 252 119 0.002370 0 0.000000 DP 0 253 125 0.002490 0 0.000000 DP 0 254 111 0.002211 0 0.000000 DP 0 255 102 0.002032 0 0.000000 DP 0 256 120 0.002390 0 0.000000 DP 0 257 153 0.003048 0 0.000000 DP 0 258 154 0.003068 0 0.000000 DP 0 259 157 0.003127 0 0.000000 DP 0 260 180 0.003586 0 0.000000 DP 0 261 201 0.004004 0 0.000000 DP 0 262 157 0.003127 0 0.000000 DP 0 263 144 0.002868 0 0.000000 DP 0 264 147 0.002928 0 0.000000 DP 0 265 115 0.002291 0 0.000000 DP 0 266 91 0.001813 0 0.000000 DP 0 267 88 0.001753 0 0.000000 DP 0 268 103 0.002052 0 0.000000 DP 0 269 107 0.002131 0 0.000000 DP 0 270 92 0.001833 0 0.000000 DP 0 271 126 0.002510 0 0.000000 DP 0 272 103 0.002052 0 0.000000 DP 0 273 85 0.001693 0 0.000000 DP 0 274 95 0.001892 0 0.000000 DP 0 275 94 0.001872 0 0.000000 DP 0 276 95 0.001892 0 0.000000 DP 0 277 101 0.002012 0 0.000000 DP 0 278 96 0.001912 0 0.000000 DP 0 279 105 0.002092 0 0.000000 DP 0 280 150 0.002988 0 0.000000 DP 0 281 106 0.002111 0 0.000000 DP 0 282 118 0.002351 0 0.000000 DP 0 283 122 0.002430 0 0.000000 DP 0 284 108 0.002151 0 0.000000 DP 0 285 146 0.002908 0 0.000000 DP 0 286 106 0.002111 0 0.000000 DP 0 287 135 0.002689 0 0.000000 DP 0 288 98 0.001952 0 0.000000 DP 0 289 86 0.001713 0 0.000000 DP 0 290 99 0.001972 0 0.000000 DP 0 291 75 0.001494 0 0.000000 DP 0 292 99 0.001972 0 0.000000 DP 0 293 65 0.001295 0 0.000000 DP 0 294 97 0.001932 0 0.000000 DP 0 295 102 0.002032 0 0.000000 DP 0 296 88 0.001753 0 0.000000 DP 0 297 71 0.001414 0 0.000000 DP 0 298 93 0.001853 0 0.000000 DP 0 299 99 0.001972 0 0.000000 DP 0 300 90 0.001793 0 0.000000 DP 0 301 99 0.001972 0 0.000000 DP 0 302 101 0.002012 0 0.000000 DP 0 303 96 0.001912 0 0.000000 DP 0 304 106 0.002111 0 0.000000 DP 0 305 87 0.001733 0 0.000000 DP 0 306 79 0.001574 0 0.000000 DP 0 307 94 0.001872 0 0.000000 DP 0 308 129 0.002570 0 0.000000 DP 0 309 153 0.003048 0 0.000000 DP 0 310 91 0.001813 0 0.000000 DP 0 311 116 0.002311 0 0.000000 DP 0 312 104 0.002072 0 0.000000 DP 0 313 100 0.001992 0 0.000000 DP 0 314 97 0.001932 0 0.000000 DP 0 315 72 0.001434 0 0.000000 DP 0 316 116 0.002311 0 0.000000 DP 0 317 118 0.002351 0 0.000000 DP 0 318 125 0.002490 0 0.000000 DP 0 319 70 0.001394 0 0.000000 DP 0 320 64 0.001275 0 0.000000 DP 0 321 88 0.001753 0 0.000000 DP 0 322 98 0.001952 0 0.000000 DP 0 323 93 0.001853 0 0.000000 DP 0 324 111 0.002211 0 0.000000 DP 0 325 114 0.002271 0 0.000000 DP 0 326 67 0.001335 0 0.000000 DP 0 327 82 0.001633 0 0.000000 DP 0 328 88 0.001753 0 0.000000 DP 0 329 117 0.002331 0 0.000000 DP 0 330 89 0.001773 0 0.000000 DP 0 331 83 0.001653 0 0.000000 DP 0 332 86 0.001713 0 0.000000 DP 0 333 67 0.001335 0 0.000000 DP 0 334 85 0.001693 0 0.000000 DP 0 335 65 0.001295 0 0.000000 DP 0 336 76 0.001514 0 0.000000 DP 0 337 82 0.001633 0 0.000000 DP 0 338 88 0.001753 0 0.000000 DP 0 339 123 0.002450 0 0.000000 DP 0 340 89 0.001773 0 0.000000 DP 0 341 93 0.001853 0 0.000000 DP 0 342 152 0.003028 0 0.000000 DP 0 343 139 0.002769 0 0.000000 DP 0 344 74 0.001474 0 0.000000 DP 0 345 80 0.001594 0 0.000000 DP 0 346 58 0.001155 0 0.000000 DP 0 347 65 0.001295 0 0.000000 DP 0 348 92 0.001833 0 0.000000 DP 0 349 143 0.002848 0 0.000000 DP 0 350 131 0.002609 0 0.000000 DP 0 351 85 0.001693 0 0.000000 DP 0 352 75 0.001494 0 0.000000 DP 0 353 61 0.001215 0 0.000000 DP 0 354 66 0.001315 0 0.000000 DP 0 355 71 0.001414 0 0.000000 DP 0 356 73 0.001454 0 0.000000 DP 0 357 101 0.002012 0 0.000000 DP 0 358 86 0.001713 0 0.000000 DP 0 359 89 0.001773 0 0.000000 DP 0 360 131 0.002609 0 0.000000 DP 0 361 137 0.002729 0 0.000000 DP 0 362 96 0.001912 0 0.000000 DP 0 363 109 0.002171 0 0.000000 DP 0 364 115 0.002291 0 0.000000 DP 0 365 109 0.002171 0 0.000000 DP 0 366 92 0.001833 0 0.000000 DP 0 367 62 0.001235 0 0.000000 DP 0 368 55 0.001096 0 0.000000 DP 0 369 71 0.001414 0 0.000000 DP 0 370 85 0.001693 0 0.000000 DP 0 371 124 0.002470 0 0.000000 DP 0 372 99 0.001972 0 0.000000 DP 0 373 98 0.001952 0 0.000000 DP 0 374 96 0.001912 0 0.000000 DP 0 375 75 0.001494 0 0.000000 DP 0 376 57 0.001135 0 0.000000 DP 0 377 85 0.001693 0 0.000000 DP 0 378 55 0.001096 0 0.000000 DP 0 379 50 0.000996 0 0.000000 DP 0 380 59 0.001175 0 0.000000 DP 0 381 55 0.001096 0 0.000000 DP 0 382 74 0.001474 0 0.000000 DP 0 383 71 0.001414 0 0.000000 DP 0 384 92 0.001833 0 0.000000 DP 0 385 98 0.001952 0 0.000000 DP 0 386 90 0.001793 0 0.000000 DP 0 387 90 0.001793 0 0.000000 DP 0 388 109 0.002171 0 0.000000 DP 0 389 110 0.002191 0 0.000000 DP 0 390 95 0.001892 0 0.000000 DP 0 391 84 0.001673 0 0.000000 DP 0 392 146 0.002908 0 0.000000 DP 0 393 137 0.002729 0 0.000000 DP 0 394 85 0.001693 0 0.000000 DP 0 395 89 0.001773 0 0.000000 DP 0 396 84 0.001673 0 0.000000 DP 0 397 53 0.001056 0 0.000000 DP 0 398 50 0.000996 0 0.000000 DP 0 399 68 0.001355 0 0.000000 DP 0 400 49 0.000976 0 0.000000 DP 0 401 57 0.001135 0 0.000000 DP 0 402 79 0.001574 0 0.000000 DP 0 403 50 0.000996 0 0.000000 DP 0 404 76 0.001514 0 0.000000 DP 0 405 79 0.001574 0 0.000000 DP 0 406 60 0.001195 0 0.000000 DP 0 407 50 0.000996 0 0.000000 DP 0 408 59 0.001175 0 0.000000 DP 0 409 47 0.000936 0 0.000000 DP 0 410 41 0.000817 0 0.000000 DP 0 411 62 0.001235 0 0.000000 DP 0 412 67 0.001335 0 0.000000 DP 0 413 62 0.001235 0 0.000000 DP 0 414 72 0.001434 0 0.000000 DP 0 415 70 0.001394 0 0.000000 DP 0 416 46 0.000916 0 0.000000 DP 0 417 40 0.000797 0 0.000000 DP 0 418 41 0.000817 0 0.000000 DP 0 419 44 0.000876 0 0.000000 DP 0 420 39 0.000777 0 0.000000 DP 0 421 47 0.000936 0 0.000000 DP 0 422 52 0.001036 0 0.000000 DP 0 423 52 0.001036 0 0.000000 DP 0 424 52 0.001036 0 0.000000 DP 0 425 49 0.000976 0 0.000000 DP 0 426 53 0.001056 0 0.000000 DP 0 427 42 0.000837 0 0.000000 DP 0 428 60 0.001195 0 0.000000 DP 0 429 44 0.000876 0 0.000000 DP 0 430 61 0.001215 0 0.000000 DP 0 431 77 0.001534 0 0.000000 DP 0 432 52 0.001036 0 0.000000 DP 0 433 48 0.000956 0 0.000000 DP 0 434 80 0.001594 0 0.000000 DP 0 435 51 0.001016 0 0.000000 DP 0 436 39 0.000777 0 0.000000 DP 0 437 42 0.000837 0 0.000000 DP 0 438 32 0.000637 0 0.000000 DP 0 439 47 0.000936 0 0.000000 DP 0 440 58 0.001155 0 0.000000 DP 0 441 54 0.001076 0 0.000000 DP 0 442 74 0.001474 0 0.000000 DP 0 443 67 0.001335 0 0.000000 DP 0 444 70 0.001394 0 0.000000 DP 0 445 51 0.001016 0 0.000000 DP 0 446 74 0.001474 0 0.000000 DP 0 447 75 0.001494 0 0.000000 DP 0 448 104 0.002072 0 0.000000 DP 0 449 101 0.002012 0 0.000000 DP 0 450 75 0.001494 0 0.000000 DP 0 451 94 0.001872 0 0.000000 DP 0 452 129 0.002570 0 0.000000 DP 0 453 50 0.000996 0 0.000000 DP 0 454 60 0.001195 0 0.000000 DP 0 455 72 0.001434 0 0.000000 DP 0 456 88 0.001753 0 0.000000 DP 0 457 76 0.001514 0 0.000000 DP 0 458 98 0.001952 0 0.000000 DP 0 459 82 0.001633 0 0.000000 DP 0 460 89 0.001773 0 0.000000 DP 0 461 88 0.001753 0 0.000000 DP 0 462 81 0.001613 0 0.000000 DP 0 463 49 0.000976 0 0.000000 DP 0 464 61 0.001215 0 0.000000 DP 0 465 41 0.000817 0 0.000000 DP 0 466 60 0.001195 0 0.000000 DP 0 467 52 0.001036 0 0.000000 DP 0 468 57 0.001135 0 0.000000 DP 0 469 47 0.000936 0 0.000000 DP 0 470 51 0.001016 0 0.000000 DP 0 471 59 0.001175 0 0.000000 DP 0 472 52 0.001036 0 0.000000 DP 0 473 55 0.001096 0 0.000000 DP 0 474 48 0.000956 0 0.000000 DP 0 475 56 0.001115 0 0.000000 DP 0 476 77 0.001534 0 0.000000 DP 0 477 69 0.001374 0 0.000000 DP 0 478 45 0.000896 0 0.000000 DP 0 479 52 0.001036 0 0.000000 DP 0 480 44 0.000876 0 0.000000 DP 0 481 57 0.001135 0 0.000000 DP 0 482 42 0.000837 0 0.000000 DP 0 483 41 0.000817 0 0.000000 DP 0 484 17 0.000339 0 0.000000 DP 0 485 17 0.000339 0 0.000000 DP 0 486 32 0.000637 0 0.000000 DP 0 487 39 0.000777 0 0.000000 DP 0 488 33 0.000657 0 0.000000 DP 0 489 32 0.000637 0 0.000000 DP 0 490 29 0.000578 0 0.000000 DP 0 491 29 0.000578 0 0.000000 DP 0 492 30 0.000598 0 0.000000 DP 0 493 28 0.000558 0 0.000000 DP 0 494 33 0.000657 0 0.000000 DP 0 495 25 0.000498 0 0.000000 DP 0 496 26 0.000518 0 0.000000 DP 0 497 29 0.000578 0 0.000000 DP 0 498 49 0.000976 0 0.000000 DP 0 499 44 0.000876 0 0.000000 DP 0 500 35 0.000697 0 0.000000 DP 0 >500 11508 0.229234 0 0.000000 # PSC, Per-sample counts. Note that the ref/het/hom counts include only SNPs, for indels see PSI. The rest include both SNPs and indels. # PSC [2]id [3]sample [4]nRefHom [5]nNonRefHom [6]nHets [7]nTransitions [8]nTransversions [9]nIndels [10]average depth [11]nSingletons [12]nHapRef [13]nHapAlt [14]nMissing PSC 0 HG002 0 1801985 2282492 2668743 1415734 935709 51.4 5020189 0 0 0 # PSI, Per-Sample Indels. Note that alt-het genotypes with both ins and del allele are counted twice, in both nInsHets and nDelHets. # PSI [2]id [3]sample [4]in-frame [5]out-frame [6]not applicable [7]out/(in+out) ratio [8]nInsHets [9]nDelHets [10]nInsAltHoms [11]nDelAltHoms PSI 0 HG002 0 0 0 0.00 310782 309024 155732 160171 # HWE # HWE [2]id [3]1st ALT allele frequency [4]Number of observations [5]25th percentile [6]median [7]75th percentile HWE 0 0.000000 2902300 0.990000 0.990000 0.990000 HWE 0 0.990000 2117889 0.000000 0.000000 0.000000 # VAF, Variant Allele Frequency determined as fraction of alternate reads in FORMAT/AD # VAF [2]id [3]sample [4]SNV VAF distribution [5]indel VAF distribution VAF 0 HG002 0,0,17,370,1111,4336,22264,86748,261669,485814,610464,467423,243056,76142,19508,6289,6268,10414,26853,88262,1667469 0,69,868,5696,18245,37043,61230,84733,111528,115892,102840,66715,39511,23938,21954,22981,25772,26306,33046,47603,89742