# This file was produced by bcftools stats (1.20+htslib-1.20) and can be plotted using plot-vcfstats. # The command line was: bcftools stats --threads 1 --apply-filters .,PASS --samples m21009_241011_231051 --fasta-ref /mnt/miniwdl_task_container/work/_miniwdl_inputs/0/human_GRCh38_no_alt_analysis_set.fasta /mnt/miniwdl_task_container/work/_miniwdl_inputs/0/m21009_241011_231051.GRCh38.small_variants.phased.vcf.gz # # Definition of sets: # ID [2]id [3]tab-separated file names ID 0 /mnt/miniwdl_task_container/work/_miniwdl_inputs/0/m21009_241011_231051.GRCh38.small_variants.phased.vcf.gz # SN, Summary numbers: # number of records .. number of data rows in the VCF # number of no-ALTs .. reference-only sites, ALT is either "." or identical to REF # number of SNPs .. number of rows with a SNP # number of MNPs .. number of rows with a MNP, such as CC>TT # number of indels .. number of rows with an indel # number of others .. number of rows with other type, for example a symbolic allele or # a complex substitution, such as ACT>TCGA # number of multiallelic sites .. number of rows with multiple alternate alleles # number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs # # Note that rows containing multiple types will be counted multiple times, in each # counter. For example, a row with a SNP and an indel increments both the SNP and # the indel counter. # # SN [2]id [3]key [4]value SN 0 number of samples: 1 SN 0 number of records: 5214489 SN 0 number of no-ALTs: 0 SN 0 number of SNPs: 4283472 SN 0 number of MNPs: 0 SN 0 number of indels: 940108 SN 0 number of others: 9 SN 0 number of multiallelic sites: 116812 SN 0 number of multiallelic SNP sites: 3381 # TSTV, transitions/transversions: # TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT) TSTV 0 2785565 1501298 1.86 2782095 1496381 1.86 # ICS, Indel context summary: # ICS [2]id [3]repeat-consistent [4]repeat-inconsistent [5]not applicable [6]c/(c+i) ratio ICS 0 252452 34553 764673 0.8796 # ICL, Indel context by length: # ICL [2]id [3]length of repeat element [4]repeat-consistent deletions) [5]repeat-inconsistent deletions [6]consistent insertions [7]inconsistent insertions [8]c/(c+i) ratio ICL 0 2 77171 5142 78945 9099 0.9164 ICL 0 3 15254 2461 9590 3142 0.8160 ICL 0 4 28055 3465 23714 4434 0.8676 ICL 0 5 7361 1269 5572 1492 0.8241 ICL 0 6 2105 676 1290 849 0.6900 ICL 0 7 794 419 248 499 0.5316 ICL 0 8 886 327 271 401 0.6138 ICL 0 9 524 194 139 226 0.6122 ICL 0 10 429 204 104 254 0.5378 # SiS, Singleton stats: # SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable SiS 0 1 2535708 1661578 874130 690956 185630 23515 481811 # AF, Stats by non-reference allele frequency: # AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable AF 0 0.000000 2538103 1662609 875494 717434 189155 24474 503805 AF 0 0.990000 1748760 1122956 625804 334244 63297 10079 260868 # QUAL, Stats by quality # QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels QUAL 0 3.0 657 332 325 232 QUAL 0 3.1 2421 1156 1265 759 QUAL 0 3.2 2766 1345 1421 859 QUAL 0 3.3 2713 1286 1427 865 QUAL 0 3.4 2938 1417 1521 911 QUAL 0 3.5 2963 1438 1525 911 QUAL 0 3.6 3020 1424 1596 896 QUAL 0 3.7 3069 1429 1640 932 QUAL 0 3.8 3080 1412 1668 932 QUAL 0 3.9 3066 1450 1616 944 QUAL 0 4.0 2911 1407 1504 971 QUAL 0 4.1 2916 1330 1586 922 QUAL 0 4.2 2857 1352 1505 973 QUAL 0 4.3 2904 1309 1595 942 QUAL 0 4.4 3016 1438 1578 901 QUAL 0 4.5 2905 1382 1523 971 QUAL 0 4.6 2831 1317 1514 973 QUAL 0 4.7 2932 1371 1561 992 QUAL 0 4.8 2859 1295 1564 943 QUAL 0 4.9 2800 1268 1532 1003 QUAL 0 5.0 2751 1342 1409 918 QUAL 0 5.1 2779 1316 1463 966 QUAL 0 5.2 2716 1239 1477 940 QUAL 0 5.3 2702 1248 1454 924 QUAL 0 5.4 2693 1231 1462 890 QUAL 0 5.5 2560 1177 1383 915 QUAL 0 5.6 2644 1210 1434 905 QUAL 0 5.7 2565 1155 1410 910 QUAL 0 5.8 2404 1133 1271 961 QUAL 0 5.9 2534 1176 1358 922 QUAL 0 6.0 2461 1099 1362 892 QUAL 0 6.1 2329 1085 1244 906 QUAL 0 6.2 2344 1077 1267 902 QUAL 0 6.3 2434 1132 1302 890 QUAL 0 6.4 2255 1060 1195 864 QUAL 0 6.5 2244 1007 1237 861 QUAL 0 6.6 2210 1031 1179 926 QUAL 0 6.7 2280 1032 1248 924 QUAL 0 6.8 2237 1011 1226 910 QUAL 0 6.9 2211 1033 1178 911 QUAL 0 7.0 2149 1005 1144 872 QUAL 0 7.1 2158 1007 1151 929 QUAL 0 7.2 2110 975 1135 908 QUAL 0 7.3 2122 995 1127 880 QUAL 0 7.4 2059 973 1086 950 QUAL 0 7.5 2111 1001 1110 864 QUAL 0 7.6 2069 994 1075 939 QUAL 0 7.7 2054 970 1084 942 QUAL 0 7.8 2085 965 1120 872 QUAL 0 7.9 1938 908 1030 925 QUAL 0 8.0 2038 983 1055 874 QUAL 0 8.1 1912 904 1008 916 QUAL 0 8.2 1970 906 1064 894 QUAL 0 8.3 1958 913 1045 954 QUAL 0 8.4 2014 931 1083 935 QUAL 0 8.5 2053 983 1070 948 QUAL 0 8.6 2040 973 1067 868 QUAL 0 8.7 1966 911 1055 904 QUAL 0 8.8 1901 905 996 890 QUAL 0 8.9 1945 917 1028 910 QUAL 0 9.0 1953 930 1023 917 QUAL 0 9.1 1911 917 994 925 QUAL 0 9.2 1838 855 983 882 QUAL 0 9.3 1879 884 995 848 QUAL 0 9.4 1867 877 990 935 QUAL 0 9.5 1870 867 1003 901 QUAL 0 9.6 1813 848 965 992 QUAL 0 9.7 1832 890 942 908 QUAL 0 9.8 1817 898 919 916 QUAL 0 9.9 1836 859 977 899 QUAL 0 10.0 1791 867 924 895 QUAL 0 10.1 1751 822 929 873 QUAL 0 10.2 1835 855 980 938 QUAL 0 10.3 1763 846 917 951 QUAL 0 10.4 1833 889 944 989 QUAL 0 10.5 1736 784 952 936 QUAL 0 10.6 1777 810 967 991 QUAL 0 10.7 1754 851 903 981 QUAL 0 10.8 1769 820 949 969 QUAL 0 10.9 1703 795 908 940 QUAL 0 11.0 1786 826 960 958 QUAL 0 11.1 1635 754 881 919 QUAL 0 11.2 1705 781 924 926 QUAL 0 11.3 1725 812 913 895 QUAL 0 11.4 1736 813 923 906 QUAL 0 11.5 1642 786 856 957 QUAL 0 11.6 1774 836 938 914 QUAL 0 11.7 1733 825 908 924 QUAL 0 11.8 1696 843 853 925 QUAL 0 11.9 1677 783 894 931 QUAL 0 12.0 1729 836 893 946 QUAL 0 12.1 1641 770 871 892 QUAL 0 12.2 1677 794 883 954 QUAL 0 12.3 1626 779 847 974 QUAL 0 12.4 1586 758 828 973 QUAL 0 12.5 1641 772 869 963 QUAL 0 12.6 1687 815 872 951 QUAL 0 12.7 1621 760 861 974 QUAL 0 12.8 1606 783 823 942 QUAL 0 12.9 1611 764 847 991 QUAL 0 13.0 1615 772 843 966 QUAL 0 13.1 1621 746 875 962 QUAL 0 13.2 1541 723 818 966 QUAL 0 13.3 1628 755 873 992 QUAL 0 13.4 1606 769 837 992 QUAL 0 13.5 1608 749 859 989 QUAL 0 13.6 1663 789 874 980 QUAL 0 13.7 1571 759 812 997 QUAL 0 13.8 1550 747 803 968 QUAL 0 13.9 1615 780 835 1023 QUAL 0 14.0 1558 767 791 987 QUAL 0 14.1 1595 745 850 931 QUAL 0 14.2 1540 745 795 1039 QUAL 0 14.3 1590 750 840 969 QUAL 0 14.4 1518 721 797 998 QUAL 0 14.5 1556 737 819 968 QUAL 0 14.6 1601 779 822 1002 QUAL 0 14.7 1625 807 818 968 QUAL 0 14.8 1487 695 792 955 QUAL 0 14.9 1535 733 802 931 QUAL 0 15.0 1596 763 833 1026 QUAL 0 15.1 1547 726 821 1022 QUAL 0 15.2 1630 790 840 990 QUAL 0 15.3 1516 736 780 992 QUAL 0 15.4 1536 746 790 1042 QUAL 0 15.5 1553 786 767 1015 QUAL 0 15.6 1568 725 843 967 QUAL 0 15.7 1479 706 773 986 QUAL 0 15.8 1416 682 734 1024 QUAL 0 15.9 1493 699 794 1024 QUAL 0 16.0 1500 714 786 1002 QUAL 0 16.1 1508 733 775 1040 QUAL 0 16.2 1465 725 740 997 QUAL 0 16.3 1485 734 751 985 QUAL 0 16.4 1460 710 750 1006 QUAL 0 16.5 1526 736 790 994 QUAL 0 16.6 1516 724 792 1042 QUAL 0 16.7 1540 725 815 1046 QUAL 0 16.8 1460 714 746 960 QUAL 0 16.9 1449 720 729 1040 QUAL 0 17.0 1399 647 752 1014 QUAL 0 17.1 1440 675 765 1001 QUAL 0 17.2 1477 695 782 996 QUAL 0 17.3 1465 715 750 989 QUAL 0 17.4 1438 697 741 1061 QUAL 0 17.5 1439 680 759 1042 QUAL 0 17.6 1439 742 697 1031 QUAL 0 17.7 1477 695 782 1042 QUAL 0 17.8 1392 687 705 1047 QUAL 0 17.9 1501 735 766 1027 QUAL 0 18.0 1448 672 776 1009 QUAL 0 18.1 1546 748 798 1034 QUAL 0 18.2 1528 752 776 1037 QUAL 0 18.3 1495 703 792 1030 QUAL 0 18.4 1480 739 741 1041 QUAL 0 18.5 1404 684 720 1037 QUAL 0 18.6 1435 683 752 1011 QUAL 0 18.7 1374 654 720 1041 QUAL 0 18.8 1424 681 743 1026 QUAL 0 18.9 1445 674 771 1052 QUAL 0 19.0 1428 697 731 1018 QUAL 0 19.1 1464 732 732 1101 QUAL 0 19.2 1468 713 755 1071 QUAL 0 19.3 1365 696 669 1038 QUAL 0 19.4 1476 741 735 992 QUAL 0 19.5 1426 693 733 1097 QUAL 0 19.6 1378 667 711 1100 QUAL 0 19.7 1445 696 749 1022 QUAL 0 19.8 1394 700 694 1088 QUAL 0 19.9 1473 720 753 1095 QUAL 0 20.0 1453 714 739 1069 QUAL 0 20.1 1421 684 737 1076 QUAL 0 20.2 1359 667 692 1065 QUAL 0 20.3 1390 700 690 1084 QUAL 0 20.4 1423 739 684 1036 QUAL 0 20.5 1355 658 697 1097 QUAL 0 20.6 1385 654 731 1143 QUAL 0 20.7 1443 738 705 1076 QUAL 0 20.8 1329 658 671 1037 QUAL 0 20.9 1395 689 706 1024 QUAL 0 21.0 1397 683 714 1045 QUAL 0 21.1 1384 694 690 1108 QUAL 0 21.2 1378 658 720 1097 QUAL 0 21.3 1410 697 713 1064 QUAL 0 21.4 1356 619 737 1133 QUAL 0 21.5 1425 737 688 1055 QUAL 0 21.6 1389 677 712 1113 QUAL 0 21.7 1381 668 713 1105 QUAL 0 21.8 1355 643 712 1098 QUAL 0 21.9 1428 695 733 1114 QUAL 0 22.0 1391 683 708 1121 QUAL 0 22.1 1407 715 692 1094 QUAL 0 22.2 1407 667 740 1039 QUAL 0 22.3 1423 662 761 1157 QUAL 0 22.4 1386 708 678 1089 QUAL 0 22.5 1385 657 728 1142 QUAL 0 22.6 1423 723 700 1136 QUAL 0 22.7 1371 683 688 1095 QUAL 0 22.8 1359 666 693 1132 QUAL 0 22.9 1424 739 685 1189 QUAL 0 23.0 1362 688 674 1148 QUAL 0 23.1 1313 664 649 1133 QUAL 0 23.2 1389 709 680 1143 QUAL 0 23.3 1347 645 702 1093 QUAL 0 23.4 1380 723 657 1119 QUAL 0 23.5 1374 699 675 1140 QUAL 0 23.6 1424 685 739 1147 QUAL 0 23.7 1355 692 663 1041 QUAL 0 23.8 1309 629 680 1135 QUAL 0 23.9 1374 688 686 1127 QUAL 0 24.0 1311 648 663 1096 QUAL 0 24.1 1384 685 699 1136 QUAL 0 24.2 1289 678 611 1083 QUAL 0 24.3 1353 685 668 1102 QUAL 0 24.4 1390 723 667 1117 QUAL 0 24.5 1425 727 698 1132 QUAL 0 24.6 1341 705 636 1094 QUAL 0 24.7 1364 729 635 1128 QUAL 0 24.8 1327 662 665 1129 QUAL 0 24.9 1331 650 681 1130 QUAL 0 25.0 1407 688 719 1175 QUAL 0 25.1 1357 657 700 1139 QUAL 0 25.2 1394 725 669 1182 QUAL 0 25.3 1408 727 681 1142 QUAL 0 25.4 1330 675 655 1161 QUAL 0 25.5 1448 797 651 1152 QUAL 0 25.6 1424 756 668 1166 QUAL 0 25.7 1389 727 662 1187 QUAL 0 25.8 1402 735 667 1193 QUAL 0 25.9 1418 741 677 1168 QUAL 0 26.0 1449 765 684 1164 QUAL 0 26.1 1484 760 724 1193 QUAL 0 26.2 1408 704 704 1113 QUAL 0 26.3 1460 802 658 1210 QUAL 0 26.4 1444 763 681 1183 QUAL 0 26.5 1412 702 710 1228 QUAL 0 26.6 1473 767 706 1178 QUAL 0 26.7 1444 794 650 1178 QUAL 0 26.8 1394 735 659 1164 QUAL 0 26.9 1397 740 657 1203 QUAL 0 27.0 1485 777 708 1137 QUAL 0 27.1 1489 779 710 1224 QUAL 0 27.2 1433 730 703 1176 QUAL 0 27.3 1465 800 665 1152 QUAL 0 27.4 1479 791 688 1230 QUAL 0 27.5 1441 768 673 1228 QUAL 0 27.6 1474 776 698 1234 QUAL 0 27.7 1487 789 698 1234 QUAL 0 27.8 1463 805 658 1218 QUAL 0 27.9 1459 811 648 1262 QUAL 0 28.0 1436 795 641 1248 QUAL 0 28.1 1514 831 683 1216 QUAL 0 28.2 1545 839 706 1232 QUAL 0 28.3 1426 783 643 1226 QUAL 0 28.4 1503 801 702 1247 QUAL 0 28.5 1557 863 694 1221 QUAL 0 28.6 1562 859 703 1252 QUAL 0 28.7 1483 779 704 1256 QUAL 0 28.8 1564 867 697 1234 QUAL 0 28.9 1575 841 734 1248 QUAL 0 29.0 1592 887 705 1245 QUAL 0 29.1 1512 848 664 1250 QUAL 0 29.2 1488 858 630 1253 QUAL 0 29.3 1560 880 680 1252 QUAL 0 29.4 1620 853 767 1264 QUAL 0 29.5 1672 913 759 1307 QUAL 0 29.6 1607 895 712 1285 QUAL 0 29.7 1600 935 665 1250 QUAL 0 29.8 1596 888 708 1265 QUAL 0 29.9 1612 875 737 1254 QUAL 0 30.0 1680 953 727 1312 QUAL 0 30.1 1626 915 711 1268 QUAL 0 30.2 1672 983 689 1324 QUAL 0 30.3 1628 923 705 1342 QUAL 0 30.4 1639 929 710 1295 QUAL 0 30.5 1657 951 706 1277 QUAL 0 30.6 1693 946 747 1264 QUAL 0 30.7 1699 977 722 1376 QUAL 0 30.8 1685 974 711 1229 QUAL 0 30.9 1687 968 719 1299 QUAL 0 31.0 1684 967 717 1279 QUAL 0 31.1 1713 952 761 1323 QUAL 0 31.2 1758 1006 752 1322 QUAL 0 31.3 1687 947 740 1327 QUAL 0 31.4 1761 990 771 1351 QUAL 0 31.5 1732 968 764 1311 QUAL 0 31.6 1646 977 669 1345 QUAL 0 31.7 1775 1016 759 1369 QUAL 0 31.8 1796 1026 770 1389 QUAL 0 31.9 1718 978 740 1328 QUAL 0 32.0 1715 957 758 1376 QUAL 0 32.1 1762 1038 724 1382 QUAL 0 32.2 1668 976 692 1414 QUAL 0 32.3 1758 965 793 1306 QUAL 0 32.4 1775 988 787 1358 QUAL 0 32.5 1760 1015 745 1388 QUAL 0 32.6 1812 1041 771 1337 QUAL 0 32.7 1767 1013 754 1352 QUAL 0 32.8 1813 1053 760 1387 QUAL 0 32.9 1723 1006 717 1324 QUAL 0 33.0 1792 1083 709 1410 QUAL 0 33.1 1808 1053 755 1445 QUAL 0 33.2 1788 1049 739 1434 QUAL 0 33.3 1760 991 769 1407 QUAL 0 33.4 1733 1020 713 1436 QUAL 0 33.5 1799 1042 757 1474 QUAL 0 33.6 1826 1037 789 1446 QUAL 0 33.7 1742 1029 713 1376 QUAL 0 33.8 1815 1040 775 1454 QUAL 0 33.9 1789 1112 677 1416 QUAL 0 34.0 1763 1064 699 1443 QUAL 0 34.1 1773 1075 698 1410 QUAL 0 34.2 1872 1139 733 1539 QUAL 0 34.3 1876 1115 761 1458 QUAL 0 34.4 1939 1158 781 1456 QUAL 0 34.5 1866 1129 737 1500 QUAL 0 34.6 1882 1123 759 1449 QUAL 0 34.7 1953 1142 811 1482 QUAL 0 34.8 1883 1088 795 1522 QUAL 0 34.9 1910 1091 819 1454 QUAL 0 35.0 1852 1072 780 1492 QUAL 0 35.1 1911 1124 787 1526 QUAL 0 35.2 1930 1159 771 1574 QUAL 0 35.3 1995 1218 777 1516 QUAL 0 35.4 1916 1138 778 1509 QUAL 0 35.5 1905 1138 767 1505 QUAL 0 35.6 2010 1193 817 1568 QUAL 0 35.7 1993 1211 782 1551 QUAL 0 35.8 2088 1250 838 1461 QUAL 0 35.9 2018 1150 868 1481 QUAL 0 36.0 2038 1174 864 1523 QUAL 0 36.1 1949 1154 795 1525 QUAL 0 36.2 2030 1234 796 1602 QUAL 0 36.3 2025 1230 795 1507 QUAL 0 36.4 2008 1251 757 1531 QUAL 0 36.5 2054 1266 788 1591 QUAL 0 36.6 2051 1242 809 1553 QUAL 0 36.7 2065 1238 827 1575 QUAL 0 36.8 2166 1306 860 1575 QUAL 0 36.9 2137 1277 860 1582 QUAL 0 37.0 2212 1337 875 1606 QUAL 0 37.1 2263 1399 864 1602 QUAL 0 37.2 2118 1249 869 1645 QUAL 0 37.3 2158 1310 848 1637 QUAL 0 37.4 2218 1322 896 1625 QUAL 0 37.5 2200 1327 873 1596 QUAL 0 37.6 2297 1337 960 1633 QUAL 0 37.7 2241 1339 902 1721 QUAL 0 37.8 2361 1465 896 1672 QUAL 0 37.9 2340 1429 911 1674 QUAL 0 38.0 2314 1407 907 1736 QUAL 0 38.1 2361 1406 955 1661 QUAL 0 38.2 2470 1478 992 1689 QUAL 0 38.3 2508 1533 975 1673 QUAL 0 38.4 2470 1503 967 1733 QUAL 0 38.5 2376 1472 904 1622 QUAL 0 38.6 2511 1572 939 1691 QUAL 0 38.7 2462 1550 912 1701 QUAL 0 38.8 2583 1518 1065 1701 QUAL 0 38.9 2547 1567 980 1785 QUAL 0 39.0 2625 1658 967 1730 QUAL 0 39.1 2594 1562 1032 1755 QUAL 0 39.2 2715 1687 1028 1776 QUAL 0 39.3 2784 1747 1037 1694 QUAL 0 39.4 2732 1717 1015 1778 QUAL 0 39.5 2762 1685 1077 1721 QUAL 0 39.6 2887 1809 1078 1694 QUAL 0 39.7 2946 1861 1085 1854 QUAL 0 39.8 2934 1847 1087 1774 QUAL 0 39.9 3056 1929 1127 1828 QUAL 0 40.0 3129 1996 1133 1842 QUAL 0 40.1 3167 2001 1166 1848 QUAL 0 40.2 3156 2006 1150 1836 QUAL 0 40.3 3153 1968 1185 1874 QUAL 0 40.4 3169 2041 1128 1854 QUAL 0 40.5 3342 2092 1250 1808 QUAL 0 40.6 3302 2069 1233 1843 QUAL 0 40.7 3510 2219 1291 1867 QUAL 0 40.8 3510 2218 1292 1881 QUAL 0 40.9 3465 2178 1287 1820 QUAL 0 41.0 3633 2344 1289 1931 QUAL 0 41.1 3663 2348 1315 1942 QUAL 0 41.2 3705 2338 1367 1947 QUAL 0 41.3 3796 2406 1390 1911 QUAL 0 41.4 3939 2488 1451 1967 QUAL 0 41.5 3959 2499 1460 1908 QUAL 0 41.6 4018 2569 1449 1966 QUAL 0 41.7 4088 2551 1537 2015 QUAL 0 41.8 4230 2705 1525 1988 QUAL 0 41.9 4335 2787 1548 1921 QUAL 0 42.0 4476 2889 1587 1987 QUAL 0 42.1 4444 2875 1569 2012 QUAL 0 42.2 4607 3020 1587 2043 QUAL 0 42.3 4617 3054 1563 2003 QUAL 0 42.4 4839 3181 1658 2068 QUAL 0 42.5 4912 3179 1733 2075 QUAL 0 42.6 4875 3147 1728 2096 QUAL 0 42.7 5398 3550 1848 2096 QUAL 0 42.8 5182 3398 1784 2159 QUAL 0 42.9 5451 3497 1954 2179 QUAL 0 43.0 5519 3573 1946 2152 QUAL 0 43.1 5739 3807 1932 2083 QUAL 0 43.2 5768 3810 1958 2158 QUAL 0 43.3 6057 3995 2062 2156 QUAL 0 43.4 6072 3988 2084 2142 QUAL 0 43.5 6346 4159 2187 2183 QUAL 0 43.6 6344 4185 2159 2230 QUAL 0 43.7 6544 4307 2237 2147 QUAL 0 43.8 6799 4486 2313 2192 QUAL 0 43.9 6872 4561 2311 2256 QUAL 0 44.0 6979 4638 2341 2229 QUAL 0 44.1 7218 4738 2480 2259 QUAL 0 44.2 7454 4906 2548 2290 QUAL 0 44.3 7744 5078 2666 2323 QUAL 0 44.4 7720 5085 2635 2217 QUAL 0 44.5 8014 5264 2750 2244 QUAL 0 44.6 8259 5513 2746 2308 QUAL 0 44.7 8460 5589 2871 2330 QUAL 0 44.8 8720 5832 2888 2469 QUAL 0 44.9 8946 5981 2965 2398 QUAL 0 45.0 9096 6153 2943 2322 QUAL 0 45.1 9280 6167 3113 2299 QUAL 0 45.2 9678 6470 3208 2392 QUAL 0 45.3 9845 6646 3199 2384 QUAL 0 45.4 10108 6779 3329 2514 QUAL 0 45.5 10446 6981 3465 2460 QUAL 0 45.6 10610 7220 3390 2420 QUAL 0 45.7 10997 7317 3680 2595 QUAL 0 45.8 11095 7437 3658 2604 QUAL 0 45.9 11396 7552 3844 2554 QUAL 0 46.0 11634 7743 3891 2477 QUAL 0 46.1 11942 8061 3881 2576 QUAL 0 46.2 12160 8205 3955 2611 QUAL 0 46.3 12684 8559 4125 2573 QUAL 0 46.4 12674 8466 4208 2623 QUAL 0 46.5 13226 8846 4380 2720 QUAL 0 46.6 13411 9071 4340 2682 QUAL 0 46.7 13622 9147 4475 2627 QUAL 0 46.8 13892 9324 4568 2752 QUAL 0 46.9 14347 9751 4596 2647 QUAL 0 47.0 14455 9712 4743 2689 QUAL 0 47.1 14839 9885 4954 2748 QUAL 0 47.2 15207 10243 4964 2774 QUAL 0 47.3 15406 10545 4861 2681 QUAL 0 47.4 15691 10507 5184 2842 QUAL 0 47.5 15931 10771 5160 2878 QUAL 0 47.6 16292 10905 5387 2852 QUAL 0 47.7 16729 11354 5375 2764 QUAL 0 47.8 16755 11335 5420 2976 QUAL 0 47.9 17147 11561 5586 2804 QUAL 0 48.0 17401 11861 5540 2965 QUAL 0 48.1 17693 11978 5715 3026 QUAL 0 48.2 18014 12235 5779 2872 QUAL 0 48.3 18264 12357 5907 2946 QUAL 0 48.4 18487 12524 5963 2950 QUAL 0 48.5 18743 12769 5974 2959 QUAL 0 48.6 19062 12852 6210 2989 QUAL 0 48.7 19022 12850 6172 3060 QUAL 0 48.8 19231 13085 6146 2997 QUAL 0 48.9 19345 13078 6267 3021 QUAL 0 49.0 19560 13249 6311 3129 QUAL 0 49.1 19876 13451 6425 3044 QUAL 0 49.2 20112 13622 6490 3154 QUAL 0 49.3 20330 13877 6453 2948 QUAL 0 49.4 20486 13813 6673 3076 QUAL 0 49.5 20878 14151 6727 3066 QUAL 0 49.6 20739 14089 6650 3123 QUAL 0 49.7 20999 14259 6740 3035 QUAL 0 49.8 21247 14467 6780 3081 QUAL 0 49.9 21170 14323 6847 3104 QUAL 0 50.0 21550 14669 6881 3117 QUAL 0 50.1 21200 14346 6854 3076 QUAL 0 50.2 21437 14572 6865 3052 QUAL 0 50.3 21696 14838 6858 3207 QUAL 0 50.4 21559 14530 7029 3138 QUAL 0 50.5 21547 14493 7054 3027 QUAL 0 50.6 21869 14831 7038 3152 QUAL 0 50.7 21577 14681 6896 3066 QUAL 0 50.8 21887 14852 7035 3027 QUAL 0 50.9 21929 14954 6975 3020 QUAL 0 51.0 21582 14547 7035 3062 QUAL 0 51.1 21470 14617 6853 2967 QUAL 0 51.2 21421 14519 6902 2940 QUAL 0 51.3 21877 14844 7033 3015 QUAL 0 51.4 21766 14777 6989 3056 QUAL 0 51.5 21263 14433 6830 2963 QUAL 0 51.6 21345 14508 6837 2854 QUAL 0 51.7 21391 14532 6859 2974 QUAL 0 51.8 21314 14366 6948 2977 QUAL 0 51.9 21050 14236 6814 2939 QUAL 0 52.0 20955 14215 6740 2913 QUAL 0 52.1 20612 13910 6702 2983 QUAL 0 52.2 20669 14036 6633 2804 QUAL 0 52.3 20686 14035 6651 2826 QUAL 0 52.4 20569 13824 6745 2780 QUAL 0 52.5 20202 13761 6441 2782 QUAL 0 52.6 19928 13511 6417 2771 QUAL 0 52.7 19671 13254 6417 2742 QUAL 0 52.8 19364 13166 6198 2688 QUAL 0 52.9 19092 12897 6195 2674 QUAL 0 53.0 19162 12943 6219 2705 QUAL 0 53.1 18737 12587 6150 2626 QUAL 0 53.2 18911 12686 6225 2670 QUAL 0 53.3 18400 12381 6019 2575 QUAL 0 53.4 18176 12330 5846 2623 QUAL 0 53.5 17863 12113 5750 2542 QUAL 0 53.6 17582 12022 5560 2592 QUAL 0 53.7 17205 11765 5440 2475 QUAL 0 53.8 16855 11379 5476 2390 QUAL 0 53.9 16646 11251 5395 2488 QUAL 0 54.0 16633 11265 5368 2477 QUAL 0 54.1 16447 11140 5307 2412 QUAL 0 54.2 15883 10738 5145 2373 QUAL 0 54.3 15639 10562 5077 2342 QUAL 0 54.4 15195 10266 4929 2314 QUAL 0 54.5 15610 10515 5095 2261 QUAL 0 54.6 14820 9957 4863 2246 QUAL 0 54.7 14490 9787 4703 2286 QUAL 0 54.8 14295 9519 4776 2110 QUAL 0 54.9 14114 9635 4479 2261 QUAL 0 55.0 13933 9304 4629 2130 QUAL 0 55.1 13458 9170 4288 2213 QUAL 0 55.2 13129 8853 4276 2041 QUAL 0 55.3 12823 8623 4200 2151 QUAL 0 55.4 12826 8573 4253 2081 QUAL 0 55.5 12227 8219 4008 2090 QUAL 0 55.6 12400 8341 4059 2049 QUAL 0 55.7 11987 8083 3904 2046 QUAL 0 55.8 11571 7712 3859 1978 QUAL 0 55.9 11454 7747 3707 2046 QUAL 0 56.0 11274 7593 3681 1952 QUAL 0 56.1 11089 7353 3736 1925 QUAL 0 56.2 11048 7450 3598 1896 QUAL 0 56.3 10685 7230 3455 1901 QUAL 0 56.4 10457 7009 3448 1797 QUAL 0 56.5 10300 6981 3319 1810 QUAL 0 56.6 10344 6904 3440 1798 QUAL 0 56.7 10007 6773 3234 1823 QUAL 0 56.8 9905 6730 3175 1878 QUAL 0 56.9 9941 6774 3167 1823 QUAL 0 57.0 9546 6387 3159 1691 QUAL 0 57.1 9385 6339 3046 1771 QUAL 0 57.2 9165 6201 2964 1609 QUAL 0 57.3 9093 6224 2869 1649 QUAL 0 57.4 9190 6246 2944 1619 QUAL 0 57.5 8903 6021 2882 1720 QUAL 0 57.6 9076 6121 2955 1667 QUAL 0 57.7 8950 6029 2921 1663 QUAL 0 57.8 8987 6126 2861 1641 QUAL 0 57.9 8670 5904 2766 1619 QUAL 0 58.0 8701 5932 2769 1631 QUAL 0 58.1 8742 5876 2866 1558 QUAL 0 58.2 8671 5774 2897 1554 QUAL 0 58.3 8628 5778 2850 1521 QUAL 0 58.4 8575 5769 2806 1590 QUAL 0 58.5 8677 5860 2817 1583 QUAL 0 58.6 8789 5873 2916 1559 QUAL 0 58.7 8989 6080 2909 1509 QUAL 0 58.8 9068 6120 2948 1451 QUAL 0 58.9 9031 6142 2889 1399 QUAL 0 59.0 8868 5972 2896 1444 QUAL 0 59.1 8656 5767 2889 1389 QUAL 0 59.2 9000 6092 2908 1425 QUAL 0 59.3 9132 6209 2923 1456 QUAL 0 59.4 9397 6344 3053 1423 QUAL 0 59.5 9422 6327 3095 1354 QUAL 0 59.6 9686 6621 3065 1378 QUAL 0 59.7 9905 6688 3217 1252 QUAL 0 59.8 10137 6996 3141 1283 QUAL 0 59.9 10406 7061 3345 1336 QUAL 0 60.0 10868 7354 3514 1378 QUAL 0 60.1 11057 7524 3533 1302 QUAL 0 60.2 10956 7444 3512 1285 QUAL 0 60.3 11063 7539 3524 1338 QUAL 0 60.4 10979 7450 3529 1246 QUAL 0 60.5 10941 7452 3489 1193 QUAL 0 60.6 10798 7296 3502 1163 QUAL 0 60.7 10878 7377 3501 1161 QUAL 0 60.8 11204 7623 3581 1144 QUAL 0 60.9 11330 7683 3647 1183 QUAL 0 61.0 11816 8014 3802 1110 QUAL 0 61.1 12125 8265 3860 1082 QUAL 0 61.2 12770 8762 4008 1032 QUAL 0 61.3 13259 8956 4303 1074 QUAL 0 61.4 13368 9016 4352 991 QUAL 0 61.5 13528 9185 4343 1041 QUAL 0 61.6 13729 9248 4481 989 QUAL 0 61.7 14495 9880 4615 1028 QUAL 0 61.8 15234 10370 4864 1010 QUAL 0 61.9 15797 10844 4953 966 QUAL 0 62.0 16628 11272 5356 944 QUAL 0 62.1 16575 11316 5259 921 QUAL 0 62.2 16504 11188 5316 899 QUAL 0 62.3 15868 10861 5007 872 QUAL 0 62.4 15846 10830 5016 898 QUAL 0 62.5 15388 10462 4926 794 QUAL 0 62.6 15385 10449 4936 767 QUAL 0 62.7 14770 9897 4873 715 QUAL 0 62.8 14378 9757 4621 720 QUAL 0 62.9 14029 9542 4487 641 QUAL 0 63.0 13913 9478 4435 649 QUAL 0 63.1 13869 9439 4430 611 QUAL 0 63.2 14072 9508 4564 599 QUAL 0 63.3 13974 9433 4541 620 QUAL 0 63.4 13838 9336 4502 563 QUAL 0 63.5 13934 9407 4527 516 QUAL 0 63.6 14828 10016 4812 488 QUAL 0 63.7 15076 10188 4888 470 QUAL 0 63.8 15737 10520 5217 456 QUAL 0 63.9 16042 10820 5222 492 QUAL 0 64.0 15995 10816 5179 487 QUAL 0 64.1 16328 11007 5321 448 QUAL 0 64.2 16335 10991 5344 429 QUAL 0 64.3 16258 11009 5249 416 QUAL 0 64.4 16281 10963 5318 407 QUAL 0 64.5 16079 10924 5155 348 QUAL 0 64.6 15703 10619 5084 346 QUAL 0 64.7 15543 10468 5075 347 QUAL 0 64.8 15038 10104 4934 343 QUAL 0 64.9 14886 9951 4935 318 QUAL 0 65.0 15077 10235 4842 290 QUAL 0 65.1 15009 10041 4968 303 QUAL 0 65.2 14889 10067 4822 259 QUAL 0 65.3 16694 11290 5404 301 QUAL 0 65.4 15285 10338 4947 279 QUAL 0 65.5 14767 10097 4670 225 QUAL 0 65.6 14573 9884 4689 241 QUAL 0 65.7 14152 9562 4590 222 QUAL 0 65.8 13480 9089 4391 226 QUAL 0 65.9 12489 8483 4006 216 QUAL 0 66.0 11728 7833 3895 188 QUAL 0 66.1 11016 7508 3508 164 QUAL 0 66.2 10382 6960 3422 154 QUAL 0 66.3 9599 6404 3195 164 QUAL 0 66.4 8972 6017 2955 148 QUAL 0 66.5 8358 5556 2802 113 QUAL 0 66.6 7517 5140 2377 121 QUAL 0 66.7 6993 4733 2260 110 QUAL 0 66.8 6332 4204 2128 86 QUAL 0 66.9 5646 3737 1909 86 QUAL 0 67.0 5000 3334 1666 81 QUAL 0 67.1 4524 3032 1492 57 QUAL 0 67.2 3923 2622 1301 53 QUAL 0 67.3 3355 2295 1060 46 QUAL 0 67.4 2798 1866 932 52 QUAL 0 67.5 18603 12590 6013 218 QUAL 0 67.6 4805 3229 1576 52 QUAL 0 67.7 4515 3017 1498 56 QUAL 0 67.8 4243 2859 1384 56 QUAL 0 67.9 4093 2743 1350 39 QUAL 0 68.0 3778 2529 1249 48 QUAL 0 68.1 3817 2609 1208 35 QUAL 0 68.2 3504 2374 1130 39 QUAL 0 68.3 3367 2242 1125 33 QUAL 0 68.4 3292 2201 1091 24 QUAL 0 68.5 3078 2076 1002 17 QUAL 0 68.6 2993 2021 972 20 QUAL 0 68.7 2872 1918 954 27 QUAL 0 68.8 2699 1775 924 12 QUAL 0 68.9 2501 1676 825 25 QUAL 0 69.0 2133 1438 695 21 QUAL 0 69.1 1982 1304 678 15 QUAL 0 69.2 5488 3694 1794 39 QUAL 0 69.3 2525 1721 804 20 QUAL 0 69.4 2510 1711 799 21 QUAL 0 69.5 2350 1545 805 17 QUAL 0 69.6 2434 1646 788 14 QUAL 0 69.7 2077 1393 684 15 QUAL 0 69.8 2099 1450 649 13 QUAL 0 69.9 2148 1488 660 15 QUAL 0 70.0 2004 1377 627 13 QUAL 0 70.1 1910 1282 628 18 QUAL 0 70.2 1888 1284 604 13 QUAL 0 70.3 1711 1167 544 14 QUAL 0 70.4 1738 1154 584 11 QUAL 0 70.5 1632 1110 522 8 QUAL 0 70.6 1558 1066 492 8 QUAL 0 70.7 1463 1007 456 3 QUAL 0 70.8 1438 1002 436 8 QUAL 0 70.9 1355 928 427 7 QUAL 0 71.0 1253 831 422 10 QUAL 0 71.1 1230 827 403 9 QUAL 0 71.2 1196 790 406 5 QUAL 0 71.3 1102 752 350 3 QUAL 0 71.4 1033 669 364 8 QUAL 0 71.5 1086 729 357 4 QUAL 0 71.6 965 654 311 7 QUAL 0 71.7 884 583 301 8 QUAL 0 71.8 949 627 322 5 QUAL 0 71.9 852 580 272 2 QUAL 0 72.0 830 574 256 8 QUAL 0 72.1 796 523 273 10 QUAL 0 72.2 713 471 242 1 QUAL 0 72.3 707 475 232 4 QUAL 0 72.4 658 429 229 8 QUAL 0 72.5 592 402 190 4 QUAL 0 72.6 556 366 190 2 QUAL 0 72.7 603 409 194 3 QUAL 0 72.8 530 366 164 7 QUAL 0 72.9 540 371 169 2 QUAL 0 73.0 440 302 138 1 QUAL 0 73.1 498 330 168 0 QUAL 0 73.2 434 286 148 4 QUAL 0 73.3 402 280 122 2 QUAL 0 73.4 345 228 117 3 QUAL 0 73.5 318 210 108 3 QUAL 0 73.6 312 215 97 1 QUAL 0 73.7 283 187 96 0 QUAL 0 73.8 284 189 95 3 QUAL 0 73.9 285 185 100 1 QUAL 0 74.0 232 158 74 0 QUAL 0 74.1 249 153 96 3 QUAL 0 74.2 258 176 82 0 QUAL 0 74.3 226 147 79 1 QUAL 0 74.4 224 157 67 2 QUAL 0 74.5 188 130 58 3 QUAL 0 74.6 199 129 70 1 QUAL 0 74.7 203 143 60 3 QUAL 0 74.8 189 124 65 1 QUAL 0 74.9 205 142 63 1 QUAL 0 75.0 195 140 55 3 QUAL 0 75.1 181 124 57 1 QUAL 0 75.2 165 110 55 3 QUAL 0 75.3 155 94 61 1 QUAL 0 75.4 132 87 45 0 QUAL 0 75.5 158 105 53 3 QUAL 0 75.6 129 82 47 0 QUAL 0 75.7 138 84 54 2 QUAL 0 75.8 131 94 37 1 QUAL 0 75.9 86 62 24 1 QUAL 0 76.0 90 53 37 0 QUAL 0 76.1 106 70 36 0 QUAL 0 76.2 110 76 34 1 QUAL 0 76.3 87 60 27 0 QUAL 0 76.4 64 40 24 1 QUAL 0 76.5 74 45 29 1 QUAL 0 76.6 64 43 21 0 QUAL 0 76.7 71 49 22 0 QUAL 0 76.8 68 44 24 0 QUAL 0 76.9 70 47 23 0 QUAL 0 77.0 45 34 11 1 QUAL 0 77.1 58 43 15 0 QUAL 0 77.2 51 39 12 1 QUAL 0 77.3 64 43 21 0 QUAL 0 77.4 51 32 19 2 QUAL 0 77.5 55 35 20 0 QUAL 0 77.6 50 31 19 0 QUAL 0 77.7 43 26 17 1 QUAL 0 77.8 43 36 7 0 QUAL 0 77.9 28 19 9 1 QUAL 0 78.0 37 28 9 0 QUAL 0 78.1 40 25 15 1 QUAL 0 78.2 31 21 10 0 QUAL 0 78.3 25 14 11 1 QUAL 0 78.4 28 19 9 2 QUAL 0 78.5 28 14 14 0 QUAL 0 78.6 25 13 12 0 QUAL 0 78.7 23 13 10 0 QUAL 0 78.8 22 17 5 0 QUAL 0 78.9 23 14 9 0 QUAL 0 79.0 23 18 5 1 QUAL 0 79.1 24 16 8 0 QUAL 0 79.2 28 21 7 0 QUAL 0 79.3 17 14 3 1 QUAL 0 79.4 24 13 11 0 QUAL 0 79.5 16 9 7 0 QUAL 0 79.6 8 6 2 0 QUAL 0 79.7 22 14 8 0 QUAL 0 79.8 9 8 1 0 QUAL 0 79.9 14 6 8 0 QUAL 0 80.0 20 14 6 1 QUAL 0 80.1 12 7 5 0 QUAL 0 80.2 14 7 7 0 QUAL 0 80.3 11 8 3 1 QUAL 0 80.4 14 8 6 0 QUAL 0 80.5 22 13 9 0 QUAL 0 80.6 9 7 2 0 QUAL 0 80.7 5 3 2 1 QUAL 0 80.8 15 10 5 0 QUAL 0 80.9 11 8 3 0 QUAL 0 81.0 10 9 1 0 QUAL 0 81.1 11 7 4 1 QUAL 0 81.2 17 15 2 0 QUAL 0 81.3 7 3 4 1 QUAL 0 81.4 16 12 4 0 QUAL 0 81.5 14 12 2 0 QUAL 0 81.6 5 3 2 0 QUAL 0 81.7 15 10 5 0 QUAL 0 81.8 5 3 2 0 QUAL 0 81.9 14 9 5 0 QUAL 0 82.0 8 7 1 0 QUAL 0 82.1 10 9 1 0 QUAL 0 82.2 6 3 3 0 QUAL 0 82.3 6 4 2 0 QUAL 0 82.4 11 8 3 1 QUAL 0 82.5 11 10 1 0 QUAL 0 82.6 6 5 1 0 QUAL 0 82.7 9 7 2 1 QUAL 0 82.8 7 5 2 0 QUAL 0 82.9 5 3 2 0 QUAL 0 83.0 1 1 0 0 QUAL 0 83.1 6 4 2 0 QUAL 0 83.2 5 5 0 0 QUAL 0 83.3 9 6 3 1 QUAL 0 83.4 4 3 1 0 QUAL 0 83.5 5 3 2 0 QUAL 0 83.6 4 3 1 0 QUAL 0 83.7 7 4 3 0 QUAL 0 83.8 4 2 2 0 QUAL 0 83.9 1 0 1 0 QUAL 0 84.0 3 3 0 0 QUAL 0 84.1 2 1 1 0 QUAL 0 84.2 5 3 2 0 QUAL 0 84.3 7 4 3 0 QUAL 0 84.4 5 3 2 0 QUAL 0 84.5 3 2 1 0 QUAL 0 84.7 5 4 1 0 QUAL 0 84.8 3 3 0 0 QUAL 0 84.9 2 2 0 0 QUAL 0 85.1 5 4 1 0 QUAL 0 85.2 9 5 4 0 QUAL 0 85.4 5 3 2 0 QUAL 0 85.5 3 2 1 0 QUAL 0 85.6 1 1 0 0 QUAL 0 85.8 2 1 1 0 QUAL 0 86.0 1 1 0 0 QUAL 0 86.2 7 4 3 0 QUAL 0 86.3 1 1 0 0 QUAL 0 86.4 2 1 1 0 QUAL 0 86.5 3 1 2 0 QUAL 0 86.7 2 2 0 0 QUAL 0 86.8 1 1 0 0 QUAL 0 86.9 1 1 0 0 QUAL 0 87.0 8 6 2 0 QUAL 0 87.2 5 2 3 0 QUAL 0 87.4 1 1 0 0 QUAL 0 87.7 3 3 0 0 QUAL 0 87.8 1 0 1 0 QUAL 0 87.9 6 4 2 0 QUAL 0 88.2 4 2 2 0 QUAL 0 88.5 5 4 1 0 QUAL 0 88.8 3 2 1 0 QUAL 0 89.5 6 4 2 0 QUAL 0 89.9 2 1 1 0 QUAL 0 90.4 2 1 1 0 QUAL 0 90.8 2 2 0 0 QUAL 0 90.9 2 2 0 0 QUAL 0 91.4 1 1 0 0 QUAL 0 92.1 5 3 2 0 QUAL 0 92.9 5 3 2 0 QUAL 0 93.7 1 0 1 0 QUAL 0 93.8 3 2 1 0 QUAL 0 95.0 2 2 0 0 QUAL 0 96.5 1 1 0 0 QUAL 0 96.7 4 2 2 0 QUAL 0 97.0 0 0 0 1 QUAL 0 99.0 3099 2082 1017 16 # IDD, InDel distribution: # IDD [2]id [3]length (deletions negative) [4]number of sites [5]number of genotypes [6]mean VAF IDD 0 -60 1516 1346 0.61 IDD 0 -59 52 52 0.61 IDD 0 -58 91 88 0.66 IDD 0 -57 56 54 0.60 IDD 0 -56 136 130 0.60 IDD 0 -55 84 80 0.63 IDD 0 -54 138 133 0.59 IDD 0 -53 79 79 0.58 IDD 0 -52 163 158 0.62 IDD 0 -51 81 77 0.64 IDD 0 -50 187 184 0.59 IDD 0 -49 173 169 0.61 IDD 0 -48 250 242 0.59 IDD 0 -47 106 102 0.63 IDD 0 -46 181 175 0.61 IDD 0 -45 127 123 0.59 IDD 0 -44 227 221 0.61 IDD 0 -43 122 116 0.58 IDD 0 -42 258 252 0.60 IDD 0 -41 151 149 0.62 IDD 0 -40 411 407 0.60 IDD 0 -39 198 192 0.62 IDD 0 -38 351 339 0.59 IDD 0 -37 200 198 0.62 IDD 0 -36 498 485 0.58 IDD 0 -35 257 250 0.57 IDD 0 -34 424 411 0.59 IDD 0 -33 258 253 0.58 IDD 0 -32 684 666 0.57 IDD 0 -31 315 308 0.59 IDD 0 -30 795 776 0.57 IDD 0 -29 386 378 0.58 IDD 0 -28 1004 991 0.57 IDD 0 -27 467 454 0.57 IDD 0 -26 941 912 0.56 IDD 0 -25 630 616 0.57 IDD 0 -24 1573 1535 0.56 IDD 0 -23 563 548 0.55 IDD 0 -22 1321 1293 0.54 IDD 0 -21 740 707 0.56 IDD 0 -20 2612 2552 0.53 IDD 0 -19 914 884 0.52 IDD 0 -18 2279 2202 0.53 IDD 0 -17 1143 1097 0.54 IDD 0 -16 4001 3888 0.53 IDD 0 -15 2329 2252 0.54 IDD 0 -14 3689 3573 0.52 IDD 0 -13 2102 2042 0.51 IDD 0 -12 8030 7857 0.53 IDD 0 -11 2606 2520 0.51 IDD 0 -10 7715 7455 0.51 IDD 0 -9 4256 4105 0.52 IDD 0 -8 13956 13580 0.53 IDD 0 -7 5483 5249 0.52 IDD 0 -6 16564 15998 0.53 IDD 0 -5 14727 14279 0.56 IDD 0 -4 51166 50063 0.57 IDD 0 -3 34096 33048 0.54 IDD 0 -2 92723 89951 0.55 IDD 0 -1 228659 224714 0.60 IDD 0 1 229366 4508665 0.69 IDD 0 2 97416 92545 0.52 IDD 0 3 34889 32416 0.54 IDD 0 4 50802 48693 0.56 IDD 0 5 14530 13530 0.54 IDD 0 6 17101 15894 0.48 IDD 0 7 5623 5058 0.48 IDD 0 8 14641 13648 0.48 IDD 0 9 4409 3977 0.49 IDD 0 10 7971 7293 0.45 IDD 0 11 2741 2442 0.47 IDD 0 12 8346 7720 0.46 IDD 0 13 2137 1867 0.47 IDD 0 14 3863 3449 0.43 IDD 0 15 2361 2122 0.48 IDD 0 16 4185 3819 0.46 IDD 0 17 1220 1090 0.48 IDD 0 18 2409 2192 0.43 IDD 0 19 923 817 0.51 IDD 0 20 2765 2530 0.43 IDD 0 21 903 795 0.52 IDD 0 22 1378 1211 0.42 IDD 0 23 602 543 0.51 IDD 0 24 1855 1675 0.44 IDD 0 25 694 640 0.48 IDD 0 26 1047 923 0.44 IDD 0 27 537 493 0.52 IDD 0 28 1079 989 0.44 IDD 0 29 393 369 0.50 IDD 0 30 913 832 0.45 IDD 0 31 342 323 0.51 IDD 0 32 747 687 0.44 IDD 0 33 277 257 0.50 IDD 0 34 487 444 0.46 IDD 0 35 280 265 0.48 IDD 0 36 559 512 0.45 IDD 0 37 215 210 0.53 IDD 0 38 369 342 0.46 IDD 0 39 205 192 0.50 IDD 0 40 446 421 0.46 IDD 0 41 165 160 0.53 IDD 0 42 292 269 0.47 IDD 0 43 142 136 0.50 IDD 0 44 300 283 0.43 IDD 0 45 141 132 0.48 IDD 0 46 240 227 0.46 IDD 0 47 129 125 0.49 IDD 0 48 295 282 0.49 IDD 0 49 187 179 0.52 IDD 0 50 237 225 0.48 IDD 0 51 122 122 0.51 IDD 0 52 213 203 0.49 IDD 0 53 100 98 0.47 IDD 0 54 197 187 0.47 IDD 0 55 95 89 0.50 IDD 0 56 191 178 0.45 IDD 0 57 108 105 0.46 IDD 0 58 158 151 0.50 IDD 0 59 95 92 0.51 IDD 0 60 12001 11317 0.40 # ST, Substitution types: # ST [2]id [3]type [4]count ST 0 A>C 188460 ST 0 A>G 681464 ST 0 A>T 172243 ST 0 C>A 192371 ST 0 C>G 197121 ST 0 C>T 712038 ST 0 G>A 708648 ST 0 G>C 195716 ST 0 G>T 193089 ST 0 T>A 172030 ST 0 T>C 683415 ST 0 T>G 190268 # DP, Depth distribution # DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites (%) DP 0 2 14849 0.284764 0 0.000000 DP 0 3 17231 0.330445 0 0.000000 DP 0 4 20273 0.388782 0 0.000000 DP 0 5 27388 0.525229 0 0.000000 DP 0 6 31202 0.598371 0 0.000000 DP 0 7 38127 0.731174 0 0.000000 DP 0 8 49243 0.944349 0 0.000000 DP 0 9 61906 1.187192 0 0.000000 DP 0 10 75244 1.442979 0 0.000000 DP 0 11 93253 1.788344 0 0.000000 DP 0 12 115115 2.207599 0 0.000000 DP 0 13 137118 2.629558 0 0.000000 DP 0 14 162383 3.114073 0 0.000000 DP 0 15 191006 3.662986 0 0.000000 DP 0 16 219715 4.213548 0 0.000000 DP 0 17 247555 4.747445 0 0.000000 DP 0 18 272661 5.228911 0 0.000000 DP 0 19 293757 5.633476 0 0.000000 DP 0 20 309019 5.926161 0 0.000000 DP 0 21 314920 6.039326 0 0.000000 DP 0 22 315506 6.050564 0 0.000000 DP 0 23 305951 5.867325 0 0.000000 DP 0 24 287343 5.510473 0 0.000000 DP 0 25 265039 5.082742 0 0.000000 DP 0 26 234880 4.504372 0 0.000000 DP 0 27 205068 3.932658 0 0.000000 DP 0 28 173242 3.322320 0 0.000000 DP 0 29 144603 2.773100 0 0.000000 DP 0 30 117452 2.252416 0 0.000000 DP 0 31 93084 1.785103 0 0.000000 DP 0 32 72374 1.387940 0 0.000000 DP 0 33 54419 1.043611 0 0.000000 DP 0 34 40708 0.780671 0 0.000000 DP 0 35 30433 0.583624 0 0.000000 DP 0 36 21893 0.419849 0 0.000000 DP 0 37 15945 0.305783 0 0.000000 DP 0 38 11538 0.221268 0 0.000000 DP 0 39 8661 0.166095 0 0.000000 DP 0 40 6955 0.133378 0 0.000000 DP 0 41 5766 0.110577 0 0.000000 DP 0 42 4829 0.092607 0 0.000000 DP 0 43 3891 0.074619 0 0.000000 DP 0 44 3459 0.066334 0 0.000000 DP 0 45 3080 0.059066 0 0.000000 DP 0 46 2953 0.056631 0 0.000000 DP 0 47 2582 0.049516 0 0.000000 DP 0 48 2594 0.049746 0 0.000000 DP 0 49 2432 0.046639 0 0.000000 DP 0 50 2227 0.042708 0 0.000000 DP 0 51 2178 0.041768 0 0.000000 DP 0 52 1905 0.036533 0 0.000000 DP 0 53 1890 0.036245 0 0.000000 DP 0 54 1767 0.033886 0 0.000000 DP 0 55 1702 0.032640 0 0.000000 DP 0 56 1524 0.029226 0 0.000000 DP 0 57 1626 0.031182 0 0.000000 DP 0 58 1467 0.028133 0 0.000000 DP 0 59 1445 0.027711 0 0.000000 DP 0 60 1508 0.028919 0 0.000000 DP 0 61 1327 0.025448 0 0.000000 DP 0 62 1261 0.024183 0 0.000000 DP 0 63 1277 0.024489 0 0.000000 DP 0 64 1256 0.024087 0 0.000000 DP 0 65 1207 0.023147 0 0.000000 DP 0 66 1222 0.023435 0 0.000000 DP 0 67 1168 0.022399 0 0.000000 DP 0 68 1218 0.023358 0 0.000000 DP 0 69 1055 0.020232 0 0.000000 DP 0 70 1114 0.021364 0 0.000000 DP 0 71 1251 0.023991 0 0.000000 DP 0 72 1346 0.025813 0 0.000000 DP 0 73 1316 0.025237 0 0.000000 DP 0 74 1243 0.023837 0 0.000000 DP 0 75 1070 0.020520 0 0.000000 DP 0 76 1039 0.019925 0 0.000000 DP 0 77 1011 0.019388 0 0.000000 DP 0 78 1027 0.019695 0 0.000000 DP 0 79 823 0.015783 0 0.000000 DP 0 80 811 0.015553 0 0.000000 DP 0 81 809 0.015514 0 0.000000 DP 0 82 685 0.013136 0 0.000000 DP 0 83 713 0.013673 0 0.000000 DP 0 84 640 0.012273 0 0.000000 DP 0 85 639 0.012254 0 0.000000 DP 0 86 625 0.011986 0 0.000000 DP 0 87 598 0.011468 0 0.000000 DP 0 88 609 0.011679 0 0.000000 DP 0 89 566 0.010854 0 0.000000 DP 0 90 528 0.010126 0 0.000000 DP 0 91 611 0.011717 0 0.000000 DP 0 92 608 0.011660 0 0.000000 DP 0 93 606 0.011621 0 0.000000 DP 0 94 628 0.012043 0 0.000000 DP 0 95 559 0.010720 0 0.000000 DP 0 96 532 0.010202 0 0.000000 DP 0 97 503 0.009646 0 0.000000 DP 0 98 462 0.008860 0 0.000000 DP 0 99 507 0.009723 0 0.000000 DP 0 100 517 0.009915 0 0.000000 DP 0 101 539 0.010337 0 0.000000 DP 0 102 469 0.008994 0 0.000000 DP 0 103 442 0.008476 0 0.000000 DP 0 104 445 0.008534 0 0.000000 DP 0 105 401 0.007690 0 0.000000 DP 0 106 441 0.008457 0 0.000000 DP 0 107 507 0.009723 0 0.000000 DP 0 108 505 0.009685 0 0.000000 DP 0 109 411 0.007882 0 0.000000 DP 0 110 382 0.007326 0 0.000000 DP 0 111 390 0.007479 0 0.000000 DP 0 112 363 0.006961 0 0.000000 DP 0 113 395 0.007575 0 0.000000 DP 0 114 335 0.006424 0 0.000000 DP 0 115 361 0.006923 0 0.000000 DP 0 116 325 0.006233 0 0.000000 DP 0 117 344 0.006597 0 0.000000 DP 0 118 400 0.007671 0 0.000000 DP 0 119 413 0.007920 0 0.000000 DP 0 120 359 0.006885 0 0.000000 DP 0 121 415 0.007959 0 0.000000 DP 0 122 336 0.006444 0 0.000000 DP 0 123 315 0.006041 0 0.000000 DP 0 124 296 0.005676 0 0.000000 DP 0 125 315 0.006041 0 0.000000 DP 0 126 268 0.005140 0 0.000000 DP 0 127 227 0.004353 0 0.000000 DP 0 128 259 0.004967 0 0.000000 DP 0 129 244 0.004679 0 0.000000 DP 0 130 246 0.004718 0 0.000000 DP 0 131 213 0.004085 0 0.000000 DP 0 132 228 0.004372 0 0.000000 DP 0 133 203 0.003893 0 0.000000 DP 0 134 262 0.005024 0 0.000000 DP 0 135 293 0.005619 0 0.000000 DP 0 136 276 0.005293 0 0.000000 DP 0 137 295 0.005657 0 0.000000 DP 0 138 234 0.004487 0 0.000000 DP 0 139 266 0.005101 0 0.000000 DP 0 140 264 0.005063 0 0.000000 DP 0 141 275 0.005274 0 0.000000 DP 0 142 269 0.005159 0 0.000000 DP 0 143 249 0.004775 0 0.000000 DP 0 144 201 0.003855 0 0.000000 DP 0 145 193 0.003701 0 0.000000 DP 0 146 208 0.003989 0 0.000000 DP 0 147 184 0.003529 0 0.000000 DP 0 148 182 0.003490 0 0.000000 DP 0 149 187 0.003586 0 0.000000 DP 0 150 183 0.003509 0 0.000000 DP 0 151 157 0.003011 0 0.000000 DP 0 152 180 0.003452 0 0.000000 DP 0 153 155 0.002972 0 0.000000 DP 0 154 152 0.002915 0 0.000000 DP 0 155 146 0.002800 0 0.000000 DP 0 156 128 0.002455 0 0.000000 DP 0 157 144 0.002762 0 0.000000 DP 0 158 134 0.002570 0 0.000000 DP 0 159 164 0.003145 0 0.000000 DP 0 160 169 0.003241 0 0.000000 DP 0 161 175 0.003356 0 0.000000 DP 0 162 184 0.003529 0 0.000000 DP 0 163 166 0.003183 0 0.000000 DP 0 164 162 0.003107 0 0.000000 DP 0 165 177 0.003394 0 0.000000 DP 0 166 170 0.003260 0 0.000000 DP 0 167 208 0.003989 0 0.000000 DP 0 168 170 0.003260 0 0.000000 DP 0 169 125 0.002397 0 0.000000 DP 0 170 155 0.002972 0 0.000000 DP 0 171 170 0.003260 0 0.000000 DP 0 172 135 0.002589 0 0.000000 DP 0 173 121 0.002320 0 0.000000 DP 0 174 107 0.002052 0 0.000000 DP 0 175 137 0.002627 0 0.000000 DP 0 176 122 0.002340 0 0.000000 DP 0 177 143 0.002742 0 0.000000 DP 0 178 125 0.002397 0 0.000000 DP 0 179 153 0.002934 0 0.000000 DP 0 180 152 0.002915 0 0.000000 DP 0 181 138 0.002646 0 0.000000 DP 0 182 132 0.002531 0 0.000000 DP 0 183 114 0.002186 0 0.000000 DP 0 184 111 0.002129 0 0.000000 DP 0 185 95 0.001822 0 0.000000 DP 0 186 75 0.001438 0 0.000000 DP 0 187 96 0.001841 0 0.000000 DP 0 188 82 0.001573 0 0.000000 DP 0 189 102 0.001956 0 0.000000 DP 0 190 129 0.002474 0 0.000000 DP 0 191 114 0.002186 0 0.000000 DP 0 192 111 0.002129 0 0.000000 DP 0 193 109 0.002090 0 0.000000 DP 0 194 104 0.001994 0 0.000000 DP 0 195 120 0.002301 0 0.000000 DP 0 196 115 0.002205 0 0.000000 DP 0 197 87 0.001668 0 0.000000 DP 0 198 97 0.001860 0 0.000000 DP 0 199 77 0.001477 0 0.000000 DP 0 200 75 0.001438 0 0.000000 DP 0 201 70 0.001342 0 0.000000 DP 0 202 87 0.001668 0 0.000000 DP 0 203 81 0.001553 0 0.000000 DP 0 204 78 0.001496 0 0.000000 DP 0 205 87 0.001668 0 0.000000 DP 0 206 85 0.001630 0 0.000000 DP 0 207 88 0.001688 0 0.000000 DP 0 208 83 0.001592 0 0.000000 DP 0 209 93 0.001783 0 0.000000 DP 0 210 86 0.001649 0 0.000000 DP 0 211 81 0.001553 0 0.000000 DP 0 212 73 0.001400 0 0.000000 DP 0 213 66 0.001266 0 0.000000 DP 0 214 62 0.001189 0 0.000000 DP 0 215 64 0.001227 0 0.000000 DP 0 216 55 0.001055 0 0.000000 DP 0 217 59 0.001131 0 0.000000 DP 0 218 51 0.000978 0 0.000000 DP 0 219 59 0.001131 0 0.000000 DP 0 220 61 0.001170 0 0.000000 DP 0 221 59 0.001131 0 0.000000 DP 0 222 59 0.001131 0 0.000000 DP 0 223 58 0.001112 0 0.000000 DP 0 224 49 0.000940 0 0.000000 DP 0 225 46 0.000882 0 0.000000 DP 0 226 35 0.000671 0 0.000000 DP 0 227 39 0.000748 0 0.000000 DP 0 228 36 0.000690 0 0.000000 DP 0 229 53 0.001016 0 0.000000 DP 0 230 54 0.001036 0 0.000000 DP 0 231 50 0.000959 0 0.000000 DP 0 232 51 0.000978 0 0.000000 DP 0 233 46 0.000882 0 0.000000 DP 0 234 37 0.000710 0 0.000000 DP 0 235 49 0.000940 0 0.000000 DP 0 236 39 0.000748 0 0.000000 DP 0 237 33 0.000633 0 0.000000 DP 0 238 37 0.000710 0 0.000000 DP 0 239 39 0.000748 0 0.000000 DP 0 240 40 0.000767 0 0.000000 DP 0 241 59 0.001131 0 0.000000 DP 0 242 61 0.001170 0 0.000000 DP 0 243 53 0.001016 0 0.000000 DP 0 244 55 0.001055 0 0.000000 DP 0 245 61 0.001170 0 0.000000 DP 0 246 70 0.001342 0 0.000000 DP 0 247 63 0.001208 0 0.000000 DP 0 248 57 0.001093 0 0.000000 DP 0 249 43 0.000825 0 0.000000 DP 0 250 45 0.000863 0 0.000000 DP 0 251 36 0.000690 0 0.000000 DP 0 252 30 0.000575 0 0.000000 DP 0 253 44 0.000844 0 0.000000 DP 0 254 36 0.000690 0 0.000000 DP 0 255 20 0.000384 0 0.000000 DP 0 256 26 0.000499 0 0.000000 DP 0 257 45 0.000863 0 0.000000 DP 0 258 32 0.000614 0 0.000000 DP 0 259 39 0.000748 0 0.000000 DP 0 260 48 0.000921 0 0.000000 DP 0 261 46 0.000882 0 0.000000 DP 0 262 45 0.000863 0 0.000000 DP 0 263 21 0.000403 0 0.000000 DP 0 264 42 0.000805 0 0.000000 DP 0 265 36 0.000690 0 0.000000 DP 0 266 53 0.001016 0 0.000000 DP 0 267 38 0.000729 0 0.000000 DP 0 268 30 0.000575 0 0.000000 DP 0 269 38 0.000729 0 0.000000 DP 0 270 32 0.000614 0 0.000000 DP 0 271 37 0.000710 0 0.000000 DP 0 272 35 0.000671 0 0.000000 DP 0 273 41 0.000786 0 0.000000 DP 0 274 33 0.000633 0 0.000000 DP 0 275 45 0.000863 0 0.000000 DP 0 276 39 0.000748 0 0.000000 DP 0 277 47 0.000901 0 0.000000 DP 0 278 32 0.000614 0 0.000000 DP 0 279 31 0.000594 0 0.000000 DP 0 280 29 0.000556 0 0.000000 DP 0 281 21 0.000403 0 0.000000 DP 0 282 43 0.000825 0 0.000000 DP 0 283 22 0.000422 0 0.000000 DP 0 284 23 0.000441 0 0.000000 DP 0 285 22 0.000422 0 0.000000 DP 0 286 33 0.000633 0 0.000000 DP 0 287 20 0.000384 0 0.000000 DP 0 288 19 0.000364 0 0.000000 DP 0 289 24 0.000460 0 0.000000 DP 0 290 22 0.000422 0 0.000000 DP 0 291 12 0.000230 0 0.000000 DP 0 292 19 0.000364 0 0.000000 DP 0 293 20 0.000384 0 0.000000 DP 0 294 20 0.000384 0 0.000000 DP 0 295 21 0.000403 0 0.000000 DP 0 296 21 0.000403 0 0.000000 DP 0 297 17 0.000326 0 0.000000 DP 0 298 8 0.000153 0 0.000000 DP 0 299 20 0.000384 0 0.000000 DP 0 300 19 0.000364 0 0.000000 DP 0 301 13 0.000249 0 0.000000 DP 0 302 16 0.000307 0 0.000000 DP 0 303 19 0.000364 0 0.000000 DP 0 304 23 0.000441 0 0.000000 DP 0 305 15 0.000288 0 0.000000 DP 0 306 19 0.000364 0 0.000000 DP 0 307 9 0.000173 0 0.000000 DP 0 308 14 0.000268 0 0.000000 DP 0 309 18 0.000345 0 0.000000 DP 0 310 19 0.000364 0 0.000000 DP 0 311 19 0.000364 0 0.000000 DP 0 312 10 0.000192 0 0.000000 DP 0 313 7 0.000134 0 0.000000 DP 0 314 15 0.000288 0 0.000000 DP 0 315 24 0.000460 0 0.000000 DP 0 316 12 0.000230 0 0.000000 DP 0 317 21 0.000403 0 0.000000 DP 0 318 8 0.000153 0 0.000000 DP 0 319 7 0.000134 0 0.000000 DP 0 320 11 0.000211 0 0.000000 DP 0 321 19 0.000364 0 0.000000 DP 0 322 20 0.000384 0 0.000000 DP 0 323 15 0.000288 0 0.000000 DP 0 324 17 0.000326 0 0.000000 DP 0 325 21 0.000403 0 0.000000 DP 0 326 17 0.000326 0 0.000000 DP 0 327 14 0.000268 0 0.000000 DP 0 328 16 0.000307 0 0.000000 DP 0 329 21 0.000403 0 0.000000 DP 0 330 19 0.000364 0 0.000000 DP 0 331 15 0.000288 0 0.000000 DP 0 332 9 0.000173 0 0.000000 DP 0 333 10 0.000192 0 0.000000 DP 0 334 11 0.000211 0 0.000000 DP 0 335 16 0.000307 0 0.000000 DP 0 336 14 0.000268 0 0.000000 DP 0 337 22 0.000422 0 0.000000 DP 0 338 18 0.000345 0 0.000000 DP 0 339 16 0.000307 0 0.000000 DP 0 340 20 0.000384 0 0.000000 DP 0 341 20 0.000384 0 0.000000 DP 0 342 11 0.000211 0 0.000000 DP 0 343 16 0.000307 0 0.000000 DP 0 344 19 0.000364 0 0.000000 DP 0 345 23 0.000441 0 0.000000 DP 0 346 23 0.000441 0 0.000000 DP 0 347 16 0.000307 0 0.000000 DP 0 348 17 0.000326 0 0.000000 DP 0 349 19 0.000364 0 0.000000 DP 0 350 31 0.000594 0 0.000000 DP 0 351 16 0.000307 0 0.000000 DP 0 352 12 0.000230 0 0.000000 DP 0 353 20 0.000384 0 0.000000 DP 0 354 21 0.000403 0 0.000000 DP 0 355 16 0.000307 0 0.000000 DP 0 356 13 0.000249 0 0.000000 DP 0 357 22 0.000422 0 0.000000 DP 0 358 18 0.000345 0 0.000000 DP 0 359 19 0.000364 0 0.000000 DP 0 360 25 0.000479 0 0.000000 DP 0 361 15 0.000288 0 0.000000 DP 0 362 16 0.000307 0 0.000000 DP 0 363 19 0.000364 0 0.000000 DP 0 364 20 0.000384 0 0.000000 DP 0 365 29 0.000556 0 0.000000 DP 0 366 28 0.000537 0 0.000000 DP 0 367 17 0.000326 0 0.000000 DP 0 368 26 0.000499 0 0.000000 DP 0 369 30 0.000575 0 0.000000 DP 0 370 29 0.000556 0 0.000000 DP 0 371 26 0.000499 0 0.000000 DP 0 372 32 0.000614 0 0.000000 DP 0 373 22 0.000422 0 0.000000 DP 0 374 16 0.000307 0 0.000000 DP 0 375 24 0.000460 0 0.000000 DP 0 376 26 0.000499 0 0.000000 DP 0 377 26 0.000499 0 0.000000 DP 0 378 24 0.000460 0 0.000000 DP 0 379 19 0.000364 0 0.000000 DP 0 380 17 0.000326 0 0.000000 DP 0 381 27 0.000518 0 0.000000 DP 0 382 20 0.000384 0 0.000000 DP 0 383 15 0.000288 0 0.000000 DP 0 384 13 0.000249 0 0.000000 DP 0 385 25 0.000479 0 0.000000 DP 0 386 20 0.000384 0 0.000000 DP 0 387 17 0.000326 0 0.000000 DP 0 388 17 0.000326 0 0.000000 DP 0 389 13 0.000249 0 0.000000 DP 0 390 11 0.000211 0 0.000000 DP 0 391 14 0.000268 0 0.000000 DP 0 392 11 0.000211 0 0.000000 DP 0 393 20 0.000384 0 0.000000 DP 0 394 13 0.000249 0 0.000000 DP 0 395 15 0.000288 0 0.000000 DP 0 396 18 0.000345 0 0.000000 DP 0 397 16 0.000307 0 0.000000 DP 0 398 14 0.000268 0 0.000000 DP 0 399 21 0.000403 0 0.000000 DP 0 400 28 0.000537 0 0.000000 DP 0 401 29 0.000556 0 0.000000 DP 0 402 24 0.000460 0 0.000000 DP 0 403 36 0.000690 0 0.000000 DP 0 404 25 0.000479 0 0.000000 DP 0 405 15 0.000288 0 0.000000 DP 0 406 27 0.000518 0 0.000000 DP 0 407 37 0.000710 0 0.000000 DP 0 408 30 0.000575 0 0.000000 DP 0 409 26 0.000499 0 0.000000 DP 0 410 23 0.000441 0 0.000000 DP 0 411 17 0.000326 0 0.000000 DP 0 412 30 0.000575 0 0.000000 DP 0 413 19 0.000364 0 0.000000 DP 0 414 23 0.000441 0 0.000000 DP 0 415 18 0.000345 0 0.000000 DP 0 416 18 0.000345 0 0.000000 DP 0 417 12 0.000230 0 0.000000 DP 0 418 19 0.000364 0 0.000000 DP 0 419 10 0.000192 0 0.000000 DP 0 420 19 0.000364 0 0.000000 DP 0 421 18 0.000345 0 0.000000 DP 0 422 14 0.000268 0 0.000000 DP 0 423 17 0.000326 0 0.000000 DP 0 424 18 0.000345 0 0.000000 DP 0 425 16 0.000307 0 0.000000 DP 0 426 20 0.000384 0 0.000000 DP 0 427 13 0.000249 0 0.000000 DP 0 428 21 0.000403 0 0.000000 DP 0 429 19 0.000364 0 0.000000 DP 0 430 20 0.000384 0 0.000000 DP 0 431 9 0.000173 0 0.000000 DP 0 432 16 0.000307 0 0.000000 DP 0 433 17 0.000326 0 0.000000 DP 0 434 15 0.000288 0 0.000000 DP 0 435 16 0.000307 0 0.000000 DP 0 436 18 0.000345 0 0.000000 DP 0 437 15 0.000288 0 0.000000 DP 0 438 15 0.000288 0 0.000000 DP 0 439 10 0.000192 0 0.000000 DP 0 440 8 0.000153 0 0.000000 DP 0 441 11 0.000211 0 0.000000 DP 0 442 11 0.000211 0 0.000000 DP 0 443 18 0.000345 0 0.000000 DP 0 444 12 0.000230 0 0.000000 DP 0 445 16 0.000307 0 0.000000 DP 0 446 10 0.000192 0 0.000000 DP 0 447 12 0.000230 0 0.000000 DP 0 448 12 0.000230 0 0.000000 DP 0 449 15 0.000288 0 0.000000 DP 0 450 13 0.000249 0 0.000000 DP 0 451 13 0.000249 0 0.000000 DP 0 452 19 0.000364 0 0.000000 DP 0 453 11 0.000211 0 0.000000 DP 0 454 17 0.000326 0 0.000000 DP 0 455 19 0.000364 0 0.000000 DP 0 456 18 0.000345 0 0.000000 DP 0 457 18 0.000345 0 0.000000 DP 0 458 29 0.000556 0 0.000000 DP 0 459 14 0.000268 0 0.000000 DP 0 460 17 0.000326 0 0.000000 DP 0 461 18 0.000345 0 0.000000 DP 0 462 16 0.000307 0 0.000000 DP 0 463 18 0.000345 0 0.000000 DP 0 464 16 0.000307 0 0.000000 DP 0 465 13 0.000249 0 0.000000 DP 0 466 12 0.000230 0 0.000000 DP 0 467 21 0.000403 0 0.000000 DP 0 468 21 0.000403 0 0.000000 DP 0 469 19 0.000364 0 0.000000 DP 0 470 15 0.000288 0 0.000000 DP 0 471 16 0.000307 0 0.000000 DP 0 472 12 0.000230 0 0.000000 DP 0 473 26 0.000499 0 0.000000 DP 0 474 23 0.000441 0 0.000000 DP 0 475 20 0.000384 0 0.000000 DP 0 476 27 0.000518 0 0.000000 DP 0 477 16 0.000307 0 0.000000 DP 0 478 17 0.000326 0 0.000000 DP 0 479 26 0.000499 0 0.000000 DP 0 480 12 0.000230 0 0.000000 DP 0 481 15 0.000288 0 0.000000 DP 0 482 15 0.000288 0 0.000000 DP 0 483 20 0.000384 0 0.000000 DP 0 484 16 0.000307 0 0.000000 DP 0 485 20 0.000384 0 0.000000 DP 0 486 13 0.000249 0 0.000000 DP 0 487 23 0.000441 0 0.000000 DP 0 488 24 0.000460 0 0.000000 DP 0 489 19 0.000364 0 0.000000 DP 0 490 18 0.000345 0 0.000000 DP 0 491 16 0.000307 0 0.000000 DP 0 492 21 0.000403 0 0.000000 DP 0 493 27 0.000518 0 0.000000 DP 0 494 10 0.000192 0 0.000000 DP 0 495 15 0.000288 0 0.000000 DP 0 496 21 0.000403 0 0.000000 DP 0 497 27 0.000518 0 0.000000 DP 0 498 21 0.000403 0 0.000000 DP 0 499 24 0.000460 0 0.000000 DP 0 500 19 0.000364 0 0.000000 DP 0 >500 1019 0.019542 0 0.000000 # PSC, Per-sample counts. Note that the ref/het/hom counts include only SNPs, for indels see PSI. The rest include both SNPs and indels. # PSC [2]id [3]sample [4]nRefHom [5]nNonRefHom [6]nHets [7]nTransitions [8]nTransversions [9]nIndels [10]average depth [11]nSingletons [12]nHapRef [13]nHapAlt [14]nMissing PSC 0 m21009_241011_231051 1454 1748760 2533088 2784534 1499934 938362 22.6 5213035 0 0 0 # PSI, Per-Sample Indels. Note that alt-het genotypes with both ins and del allele are counted twice, in both nInsHets and nDelHets. # PSI [2]id [3]sample [4]in-frame [5]out-frame [6]not applicable [7]out/(in+out) ratio [8]nInsHets [9]nDelHets [10]nInsAltHoms [11]nDelAltHoms PSI 0 m21009_241011_231051 0 0 0 0.00 315588 311414 167520 166724 # HWE # HWE [2]id [3]1st ALT allele frequency [4]Number of observations [5]25th percentile [6]median [7]75th percentile HWE 0 0.000000 3131484 0.990000 0.990000 0.990000 HWE 0 0.990000 2083005 0.000000 0.000000 0.000000 # VAF, Variant Allele Frequency determined as fraction of alternate reads in FORMAT/AD # VAF [2]id [3]sample [4]SNV VAF distribution [5]indel VAF distribution VAF 0 m21009_241011_231051 0,0,1581,13066,27250,51344,100043,175196,312160,387510,432633,375351,293078,163747,89037,50108,31250,24121,36469,80579,1639434 0,0,3252,24577,40769,56725,72037,82907,103981,99339,89399,73004,56334,36320,27455,25083,24283,23740,32888,42905,100453